RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 ARHGEF37A1IGU5 675 aa20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 CCDC162PA2VCL2 907 aa20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 TNPO2O14787 897 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 PIP5K1BO14986 540 aa20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 CD3EAPO15446 510 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 GLP2RO95838 553 aa20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 PENKP01210 267 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 PRSS56P0CW18 603 aa20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 ATP6V1B2P21281 511 aa20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 ACVRL1P37023 503 aa20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 GRIA3P42263 894 aa20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 GRB7Q14451 532 aa20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 POLD3Q15054 466 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 CANT1Q8WVQ1 401 aa20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 FATE1Q969F0 183 aa20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 PTTG2Q9NZH5 202 aa20.22■□□□□ 0.83
SHKBP1-225ENST00000600733 IGLV3-10A0A075B6K4 115 aa20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 MTHFD2P13995 350 aa20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 ZNF37AP17032 561 aaPredicted RBP20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 CKMT2P17540 419 aa20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 ATP4BP51164 291 aa20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 CREB5Q02930 508 aa20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 VPS26BQ4G0F5 336 aa20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 HACD2Q6Y1H2 254 aa20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 TWIST2Q8WVJ9 160 aa20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 PBXIP1Q96AQ6 731 aa20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 MYEOVQ96EZ4 313 aa20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 SLC45A3Q96JT2 553 aa20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 MAP10Q9P2G4 905 aa20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 TANC1Q9C0D5 1861 aa20.21■□□□□ 0.83
SHKBP1-225ENST00000600733 RAMP2O60895 175 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 SOAT2O75908 522 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 YBX1P67809 324 aaKnown RBP20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 MAP7Q14244 749 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 MAP7D1Q3KQU3 841 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 FBXO48Q5FWF7 155 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 C17orf99Q6UX52 265 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 KLHDC9Q8NEP7 349 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 RIN3Q8TB24 985 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 RPRD1AQ96P16 312 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 UHRF1Q96T88 793 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 ETAA1Q9NY74 926 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 A0A1B0GTL3 188 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 NME4O00746 187 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 CAPN3P20807 821 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 BIRC2Q13490 618 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 B3GNT6Q6ZMB0 384 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 DDIASQ8IXT1 998 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 DUS3LQ96G46 650 aaKnown RBP20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 TUBB1Q9H4B7 451 aa20.2■□□□□ 0.82
SHKBP1-225ENST00000600733 H0YJX3 145 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 CHRM3P20309 590 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 CTGFP29279 349 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 TXNL4AP83876 142 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 ACVR1Q04771 509 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 SERINC3Q13530 473 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 CARM1Q86X55 608 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 PCYOX1LQ8NBM8 494 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 ATAD1Q8NBU5 361 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 GRIN3AQ8TCU5 1115 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 TRPC4APQ8TEL6 797 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 ROPN1LQ96C74 230 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 BTN2A3PQ96KV6 586 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 ZNF512Q96ME7 567 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 TMEM79Q9BSE2 394 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 OSBPL11Q9BXB4 747 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 FBXO44Q9H4M3 255 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 BTRCQ9Y297 605 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 PLXNA3P51805 1871 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 AZIN1O14977 448 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 AKAP10O43572 662 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 OR1E1P30953 314 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 CLCN2P51788 898 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 NR1H2P55055 460 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 IL10RBQ08334 325 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 CAPRIN1Q14444 709 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 MRNIPQ6NTE8 343 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 ZNF598Q86UK7 904 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 PHYKPLQ8IUZ5 450 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 ATP6V0D2Q8N8Y2 350 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 OR2T34Q8NGX1 318 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 OR2T3Q8NH03 318 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 SOCS4Q8WXH5 440 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 GPATCH1Q9BRR8 931 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 EFHD1Q9BUP0 239 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 TRIM8Q9BZR9 551 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 POLR1EQ9GZS1 481 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 EGFL7Q9UHF1 273 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 DMTF1Q9Y222 760 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 PRG3Q9Y2Y8 225 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 ACTL7AQ9Y615 435 aa20.19■□□□□ 0.82
SHKBP1-225ENST00000600733 LINC00032P0C843 101 aa20.18■□□□□ 0.82
SHKBP1-225ENST00000600733 HSPA8P11142 646 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-225ENST00000600733 GFAPP14136 432 aa20.18■□□□□ 0.82
SHKBP1-225ENST00000600733 TSPAN14Q8NG11 270 aa20.18■□□□□ 0.82
SHKBP1-225ENST00000600733 HIC2Q96JB3 615 aa20.18■□□□□ 0.82
SHKBP1-225ENST00000600733 ATOH8Q96SQ7 321 aa20.18■□□□□ 0.82
SHKBP1-225ENST00000600733 UPF3AQ9H1J1 476 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-225ENST00000600733 DDX18Q9NVP1 670 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-225ENST00000600733 HTTP42858 3142 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms