RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 FAM182AQ5T1J6 154 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 ATP1A1-AS1Q5TC04 95 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 PNCKQ6P2M8 343 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 BRAT1Q6PJG6 821 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 MARK2Q7KZI7 788 aaKnown RBP8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 HSD11B1LQ7Z5J1 315 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 TSPAN33Q86UF1 283 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 PIM3Q86V86 326 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 HEATR4Q86WZ0 1026 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 ZNF677Q86XU0 584 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 ARFGAP1Q8N6T3 406 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 C3orf20Q8ND61 904 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 CASKIN2Q8WXE0 1202 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 NKD1Q969G9 470 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 CTRCQ99895 268 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 SEMA3CQ99985 751 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 CINPQ9BW66 212 aaPredicted RBP8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 SLC12A9Q9BXP2 914 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 EPN3Q9H201 632 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 ATP13A3Q9H7F0 1226 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 ZNF71Q9NQZ8 489 aaPredicted RBP8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 SEPT10Q9P0V9 454 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 TAAR2Q9P1P5 351 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 CD84Q9UIB8 345 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 SUFUQ9UMX1 484 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 AP4E1Q9UPM8 1137 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 SIK3Q9Y2K2 1263 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 TMEM98Q9Y2Y6 226 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 PCDHGC4Q9Y5F7 938 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 PCYT1BQ9Y5K3 369 aaPredicted RBP8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 HIVEP3Q5T1R4 2406 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 A0A1W2PQC6 194 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 SIGLEC16A6NMB1 481 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 A8MU76 341 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 WASH4PA8MWX3 477 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 TMX2-CTNND1H3BSU7 103 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 EEF2KO00418 725 aaKnown RBP8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 TRAFD1O14545 582 aaPredicted RBP8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 NKX2-8O15522 239 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 NUDT21O43809 227 aaKnown RBP8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 PPFIA2O75334 1257 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 CPNE6O95741 557 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 CEACAM5P06731 702 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 CTPS1P17812 591 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 NR1D1P20393 614 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 UGT1A3P35503 534 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 TRIM23P36406 574 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 STAT1P42224 750 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 PPM1FP49593 454 aaPredicted RBP8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 MAXP61244 160 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 CTBSQ01459 385 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 SLC10A7Q0GE19 358 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 AGERQ15109 404 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 PPP6R3Q5H9R7 873 aaPredicted RBP8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 PPP1R15BQ5SWA1 713 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 AFMIDQ63HM1 303 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 DPPA4Q7L190 304 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 FAM129CQ86XR2 697 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 PHF13Q86YI8 300 aaPredicted RBP8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 NAGSQ8N159 534 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 PGBD5Q8N414 524 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 IL22RA1Q8N6P7 574 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 ZSCAN1Q8NBB4 408 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 OR6C4Q8NGE1 309 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 GPBAR1Q8TDU6 330 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 ECHDC3Q96DC8 303 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 NUS1Q96E22 293 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 COQ10AQ96MF6 247 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 PCMTD1Q96MG8 357 aaPredicted RBP8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 ZNF641Q96N77 438 aaPredicted RBP8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 SNRNP25Q9BV90 132 aaKnown RBP8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 ZMYND15Q9H091 742 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 SLC25A18Q9H1K4 315 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 CATSPERBQ9H7T0 1116 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 SP110Q9HB58 689 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 ETNK2Q9NVF9 386 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 PRKAB1Q9Y478 270 aa8.64□□□□□ -1.03
SHKBP1-220ENST00000599716 NPIPB15A6NHN6 443 aaPredicted RBP8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 EFCAB7A8K855 629 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 STMND1H3BQB6 276 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 CALB1P05937 261 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 MYCLP1P12525 358 aaPredicted RBP8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 TCF4P15884 667 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 PNLIPP16233 465 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 ERCC2P18074 760 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 PSMA2P25787 234 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 ERCC5P28715 1186 aaPredicted RBP8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 ADCY8P40145 1251 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 SUOXP51687 545 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 POLE2P56282 527 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 TRAF2Q12933 501 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 BIRC2Q13490 618 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 ANKS6Q68DC2 871 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 RAET1GQ6H3X3 334 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 DCUN1D2Q6PH85 259 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 TRIM72Q6ZMU5 477 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 Q6ZVL8 140 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 CYP4V2Q6ZWL3 525 aaPredicted RBP8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 C17orf82Q86X59 251 aaPredicted RBP8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms