RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CFIP05156 583 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 CXCR2P25025 360 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 FAPQ12884 760 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 PUS10Q3MIT2 529 aaKnown RBP9.84□□□□□ -0.83
LIG3-216ENST00000593099 PIK3R6Q5UE93 754 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 KIAA0319Q5VV43 1072 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 NAIF1Q69YI7 327 aaPredicted RBP9.84□□□□□ -0.83
LIG3-216ENST00000593099 SLC41A1Q8IVJ1 513 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 SLC35B2Q8TB61 432 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 NDNQ99608 321 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 TMBIM4Q9HC24 238 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 VWA7Q9Y334 891 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 QSER1Q2KHR3 1735 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 FAM237BA0A1B0GVD1 139 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 UPK3BL1B0FP48 263 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 UPK3BL2E5RIL1 263 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 LAMTOR5O43504 91 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ALPPL2P10696 532 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ATP6V0D1P61421 351 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 TAF1AQ15573 450 aaPredicted RBP9.83□□□□□ -0.84
LIG3-216ENST00000593099 EGFL6Q8IUX8 553 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 CHCHD4Q8N4Q1 142 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 PHC3Q8NDX5 983 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 EFHD2Q96C19 240 aaPredicted RBP9.83□□□□□ -0.84
LIG3-216ENST00000593099 ACSS3Q9H6R3 686 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 EIF2B3Q9NR50 452 aaKnown RBP9.83□□□□□ -0.84
LIG3-216ENST00000593099 SPATA6Q9NWH7 488 aaPredicted RBP9.83□□□□□ -0.84
LIG3-216ENST00000593099 CD84Q9UIB8 345 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 RAB21Q9UL25 225 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 TMCO1Q9UM00 188 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ADAMTSL1Q8N6G6 1762 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ISM1B1AKI9 464 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 SLCO1B7G3V0H7 640 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 GYG2O15488 501 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 BANF1O75531 89 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ADH1BP00325 375 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 IRF8Q02556 426 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.83□□□□□ -0.84
LIG3-216ENST00000593099 TSTD2Q5T7W7 516 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 MILR1Q7Z6M3 343 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 SCD5Q86SK9 330 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 HID1Q8IV36 788 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ZNF655Q8N720 491 aaPredicted RBP9.83□□□□□ -0.84
LIG3-216ENST00000593099 UBE2E3Q969T4 207 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 APOPT1Q96IL0 206 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 FEM1AQ9BSK4 669 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 CHRAC1Q9NRG0 131 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 A0A088AWK7 358 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 MGAT4DA6NG13 374 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ZNF487B1APH4 448 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 C5orf58C9J3I9 102 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ZNF10P21506 573 aaPredicted RBP9.83□□□□□ -0.84
LIG3-216ENST00000593099 PLOD1Q02809 727 aaPredicted RBP9.83□□□□□ -0.84
LIG3-216ENST00000593099 LRRC73Q5JTD7 316 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 SNX30Q5VWJ9 437 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 SLC9A4Q6AI14 798 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 CNSTQ6PJW8 725 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 DEFB123Q8N688 67 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 CEP70Q8NHQ1 597 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 HAUS8Q9BT25 410 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ASPSCR1Q9BZE9 553 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ABCG8Q9H221 673 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 RHOJQ9H4E5 214 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ADA2Q9NZK5 511 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 MYH7BA7E2Y1 1941 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 GNG14A0A1W2PPG7 69 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 NPC1O15118 1278 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 WBP4O75554 376 aaKnown RBP9.83□□□□□ -0.84
LIG3-216ENST00000593099 RASSF9O75901 435 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 RPA3P35244 121 aaPredicted RBP9.83□□□□□ -0.84
LIG3-216ENST00000593099 ALDH18A1P54886 795 aaKnown RBP9.83□□□□□ -0.84
LIG3-216ENST00000593099 RAB10P61026 200 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 PTCRAQ6ISU1 281 aaPredicted RBP9.83□□□□□ -0.84
LIG3-216ENST00000593099 KBTBD6Q86V97 674 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 TMEM173Q86WV6 379 aaPredicted RBP9.83□□□□□ -0.84
LIG3-216ENST00000593099 UMODL1-AS1Q8N2C9 162 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 VN1R2Q8NFZ6 395 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 DNAJC1Q96KC8 554 aaKnown RBP9.83□□□□□ -0.84
LIG3-216ENST00000593099 PEBP4Q96S96 227 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 TCF12Q99081 682 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 CDH19Q9H159 772 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ALG9Q9H6U8 611 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ECT2Q9H8V3 914 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 CSNK1G1Q9HCP0 422 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 PRELID1Q9Y255 219 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 ARL2BPQ9Y2Y0 163 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 GMEB1Q9Y692 573 aa9.83□□□□□ -0.84
LIG3-216ENST00000593099 MYO7AQ13402 2215 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 ARHGEF9O43307 516 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 TULP3O75386 442 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 CCR3P51677 355 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 WDR45BQ5MNZ6 344 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 IRAK1BP1Q5VVH5 260 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 TMEM25Q86YD3 366 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 PCYOX1LQ8NBM8 494 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 SHKBP1Q8TBC3 707 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 METTL6Q8TCB7 284 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 IGSF8Q969P0 613 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 NUS1Q96E22 293 aa9.82□□□□□ -0.84
LIG3-216ENST00000593099 PWWP2AQ96N64 755 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms