RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 PAX7P23759 505 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 PMLP29590 882 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 HSPA13P48723 471 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 STX1BP61266 288 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 IRX1P78414 480 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 FAM189BP81408 668 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 PFKPQ01813 784 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 SLC10A7Q0GE19 358 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 CDC16Q13042 620 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 SQLEQ14534 574 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 TECRLQ5HYJ1 363 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 HECTD2Q5U5R9 776 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 PTAR1Q7Z6K3 402 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 PDSS2Q86YH6 399 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 MIB1Q86YT6 1006 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 MFN1Q8IWA4 741 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 COLGALT2Q8IYK4 626 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 LSMEM2Q8N112 164 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 KDM1BQ8NB78 822 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 HIPK4Q8NE63 616 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 BRSK1Q8TDC3 778 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 C2orf15Q8WU43 125 aaKnown RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 HDAC10Q969S8 669 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 PSMG2Q969U7 264 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 MAELQ96JY0 434 aaKnown RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 RHOVQ96L33 236 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 CATSPER2Q96P56 530 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 TRAPPC9Q96Q05 1148 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 TSC22D3Q99576 134 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 CCDC68Q9H2F9 335 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 IL37Q9NZH6 218 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 GMIPQ9P107 970 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 G3BP2Q9UN86 482 aaKnown RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 SHROOM3Q8TF72 1996 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 LOC285095A0A1B0GVY8 99 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 A0A1W2PP55 124 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 SLC12A8A0AV02 714 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 FAM92AA1XBS5 289 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 J3KR12 359 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 CASQ2O14958 399 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 ZMPSTE24O75844 475 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 CRTAMO95727 393 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 F7P08709 466 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 OR4Q2P0C623 313 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 HSPA8P11142 646 aaKnown RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 CKBP12277 381 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 ENO3P13929 434 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 UQCRBP14927 111 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 SP100P23497 879 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 GSTT1P30711 240 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 CHRNA4P43681 627 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 TM4SF4P48230 202 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 SOX9P48436 509 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 ERFP50548 548 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 SH3BGRP55822 239 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 POU4F2Q12837 409 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 ZNF460Q14592 562 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 GRAMD1BQ3KR37 738 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 SIRPB2Q5JXA9 342 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 FBXL22Q6P050 247 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 ZNF280BQ86YH2 543 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 PQLC1Q8N2U9 271 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 TXNDC5Q8NBS9 432 aaKnown RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 TOP1MTQ969P6 601 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 SGF29Q96ES7 293 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 FEM1CQ96JP0 617 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 SPATA17Q96L03 361 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 UBXN10Q96LJ8 280 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 DEPDC7Q96QD5 511 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 CENPKQ9BS16 269 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 RSRP1Q9BUV0 290 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 MEAF6Q9HAF1 191 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 POPDC3Q9HBV1 291 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 SYTL2Q9HCH5 934 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 TRMT13Q9NUP7 481 aaKnown RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 TMEM161AQ9NX61 479 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 RIMKLBQ9ULI2 386 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 PRG3Q9Y2Y8 225 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 TRAF6Q9Y4K3 522 aa7.41□□□□□ -1.22
ZNF540-206ENST00000589117 COPG1Q9Y678 874 aaKnown RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 COL4A4P53420 1690 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-206ENST00000589117 A8MT66 165 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 F5H5T6 163 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 PSMD12O00232 456 aaPredicted RBP7.4□□□□□ -1.22
ZNF540-206ENST00000589117 ENPP3O14638 875 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 BUD23O43709 281 aaKnown RBP7.4□□□□□ -1.22
ZNF540-206ENST00000589117 PARNO95453 639 aaKnown RBP7.4□□□□□ -1.22
ZNF540-206ENST00000589117 PEX11BO96011 259 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 LYNP07948 512 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 HAPLN1P10915 354 aaPredicted RBP7.4□□□□□ -1.22
ZNF540-206ENST00000589117 HOXD10P28358 340 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 GRK4P32298 578 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 ALDH1A3P47895 512 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 SLC11A2P49281 568 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 VEGFBP49765 207 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 CLCN2P51788 898 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 MAXP61244 160 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 DSC2Q02487 901 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms