RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 ARRDC2Q8TBH0 407 aa12.37□□□□□ -0.43
SS18-225ENST00000585121 GRAMD1AQ96CP6 724 aa12.37□□□□□ -0.43
SS18-225ENST00000585121 CALR3Q96L12 384 aaKnown RBP12.37□□□□□ -0.43
SS18-225ENST00000585121 TDRD1Q9BXT4 1180 aaKnown RBP12.37□□□□□ -0.43
SS18-225ENST00000585121 FGF22Q9HCT0 170 aa12.37□□□□□ -0.43
SS18-225ENST00000585121 ZZEF1O43149 2961 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 PRSS38A1L453 326 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 CAPN8A6NHC0 703 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 CSO75390 466 aaKnown RBP12.36□□□□□ -0.43
SS18-225ENST00000585121 TCEA3O75764 348 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 ZRANB2O95218 330 aaKnown RBP eCLIP12.36□□□□□ -0.43
SS18-225ENST00000585121 LCA5LO95447 670 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 CELA2BP08218 269 aaPredicted RBP12.36□□□□□ -0.43
SS18-225ENST00000585121 NAP1L1P55209 391 aaKnown RBP12.36□□□□□ -0.43
SS18-225ENST00000585121 NIPAL4Q0D2K0 466 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 PEX6Q13608 980 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 NPNTQ6UXI9 565 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 RBM44Q6ZP01 1051 aaKnown RBP12.36□□□□□ -0.43
SS18-225ENST00000585121 ZNF765Q7L2R6 523 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 TECPR1Q7Z6L1 1165 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 NT5DC3Q86UY8 548 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 RAVER1Q8IY67 606 aaKnown RBP12.36□□□□□ -0.43
SS18-225ENST00000585121 RCOR2Q8IZ40 523 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 FAM46DQ8NEK8 389 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 CCHCR1Q8TD31 782 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 AP2M1Q96CW1 435 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 MLPHQ9BV36 600 aaPredicted RBP12.36□□□□□ -0.43
SS18-225ENST00000585121 LGR4Q9BXB1 951 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 TEX101Q9BY14 249 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 SYNDIG1Q9H7V2 258 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 CARS2Q9HA77 564 aaKnown RBP12.36□□□□□ -0.43
SS18-225ENST00000585121 MRPL40Q9NQ50 206 aaKnown RBP12.36□□□□□ -0.43
SS18-225ENST00000585121 EPN1Q9Y6I3 576 aaPredicted RBP12.36□□□□□ -0.43
SS18-225ENST00000585121 PKD1L2Q7Z442 2459 aa12.36□□□□□ -0.43
SS18-225ENST00000585121 USP12O75317 370 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 TGM2P21980 687 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 ACTN2P35609 894 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 CDKN2BP42772 138 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 TNNT3P45378 269 aaPredicted RBP12.35□□□□□ -0.43
SS18-225ENST00000585121 SKOR1P84550 965 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 CDK3Q00526 305 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 PTSQ03393 145 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 ILF3Q12906 894 aaKnown RBP eCLIP12.35□□□□□ -0.43
SS18-225ENST00000585121 ZBTB17Q13105 803 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 SPIDRQ14159 915 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 KAZNQ674X7 775 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 CCDC70Q6NSX1 233 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 ADAMTSL4Q6UY14 1074 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 SPOCD1Q6ZMY3 1216 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 DAAM2Q86T65 1068 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 NLRP8Q86W28 1048 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 CCDC50Q8IVM0 306 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 LSMEM2Q8N112 164 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 KYQ8NBH2 561 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 KIAA1524Q8TCG1 905 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 RBM41Q96IZ5 413 aaKnown RBP12.35□□□□□ -0.43
SS18-225ENST00000585121 AGAP3Q96P47 875 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 CCDC3Q9BQI4 270 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 GSDMCQ9BYG8 508 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 TMEM168Q9H0V1 697 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 ABCG8Q9H221 673 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 SUDS3Q9H7L9 328 aaPredicted RBP12.35□□□□□ -0.43
SS18-225ENST00000585121 PKD2L2Q9NZM6 624 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 CD84Q9UIB8 345 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 URB1O60287 2271 aaKnown RBP12.35□□□□□ -0.43
SS18-225ENST00000585121 CHD6Q8TD26 2715 aa12.35□□□□□ -0.43
SS18-225ENST00000585121 SHROOM3Q8TF72 1996 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 ANKRD36A6QL64 1941 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 C1orf232A0A0U1RR37 186 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 ANKRD66B4E2M5 251 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 RRP8O43159 456 aaKnown RBP12.34□□□□□ -0.43
SS18-225ENST00000585121 MTSS1O43312 755 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 CST8O60676 142 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 NDUFA10O95299 355 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 CLDN7O95471 211 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 PRLP01236 227 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 GNPDA1P46926 289 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 STC1P52823 247 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 PTPRRQ15256 657 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 TFDP3Q5H9I0 405 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 PERM1Q5SV97 790 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 C11orf63Q6NUN7 778 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 LRRC69Q6ZNQ3 347 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 KATNAL2Q8IYT4 538 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 PELI3Q8N2H9 469 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 CNTD1Q8N815 330 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 EXD1Q8NHP7 514 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 TFB1MQ8WVM0 346 aaKnown RBP12.34□□□□□ -0.43
SS18-225ENST00000585121 P3H4Q92791 437 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 OLFM3Q96PB7 478 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 LYSMD1Q96S90 227 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 FRMD8Q9BZ67 464 aaPredicted RBP12.34□□□□□ -0.43
SS18-225ENST00000585121 SLC25A51Q9H1U9 297 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 DPEP2Q9H4A9 486 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 TRNAU1APQ9NX07 287 aaKnown RBP12.34□□□□□ -0.43
SS18-225ENST00000585121 SUFUQ9UMX1 484 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 PCDHB1Q9Y5F3 818 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 DSPP15924 2871 aaKnown RBP12.34□□□□□ -0.43
SS18-225ENST00000585121 LAMA5O15230 3695 aa12.34□□□□□ -0.43
SS18-225ENST00000585121 CFAP47Q6ZTR5 3102 aa12.33□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms