RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 UBTFL1P0CB47 393 aaPredicted RBP4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 YWHAQP27348 245 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 PSMA5P28066 241 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 GJB2P29033 226 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 PDIA3P30101 505 aaKnown RBP4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 RPL3P39023 403 aaKnown RBP4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 CASP2P42575 452 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 GEMIN4P57678 1058 aaKnown RBP4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 BTKQ06187 659 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 RBM39Q14498 530 aaKnown RBP4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 ANKRD1Q15327 319 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 PUM3Q15397 648 aaKnown RBP4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 AP5B1Q2VPB7 878 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 BEND3Q5T5X7 828 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 PPP1R42Q7Z4L9 355 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 PLA2G4DQ86XP0 818 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 TMC8Q8IU68 726 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 PDILTQ8N807 584 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 ATG16L2Q8NAA4 619 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 TDRD7Q8NHU6 1098 aaKnown RBP4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 TBC1D22AQ8WUA7 517 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 UPF3BQ9BZI7 483 aaKnown RBP4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 MVB12BQ9H7P6 319 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 TTC12Q9H892 705 aaPredicted RBP4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 WDR6Q9NNW5 1121 aaKnown RBP4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 DDX19AQ9NUU7 478 aaKnown RBP4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 MIS18AQ9NYP9 233 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 C9orf78Q9NZ63 289 aaPredicted RBP4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 GRHL1Q9NZI5 618 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 NLKQ9UBE8 527 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 LRRFIP2Q9Y608 721 aaKnown RBP4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 CYP46A1Q9Y6A2 500 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 USP6P35125 1406 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 MAP3K19Q56UN5 1328 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 PEAK1Q9H792 1746 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 CRYBG1Q9Y4K1 1723 aa4.18□□□□□ -1.74
SMCHD1-208ENST00000583344 A0A096LPK6 155 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 MAGEA13PA6NCF6 341 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 J3KR12 359 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 TOM1O60784 492 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 LDHCP07864 332 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 AMD1P17707 334 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 PTPN9P43378 593 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 ADORA2A-AS1P86434 159 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 ME3Q16798 604 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 RUNDC3AQ59EK9 446 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 TAF3Q5VWG9 929 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 ATL3Q6DD88 541 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 SARM1Q6SZW1 724 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 C9orf139Q6ZV77 190 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 SYT13Q7L8C5 426 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 ERC1Q8IUD2 1116 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 CCDC117Q8IWD4 279 aaPredicted RBP4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 NAGSQ8N159 534 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 NKAPQ8N5F7 415 aaKnown RBP4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 LMNTD1Q8N9Z9 388 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 SPATA5Q8NB90 893 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 PPHLN1Q8NEY8 458 aaKnown RBP4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 OR4N2Q8NGD1 307 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 SECTM1Q8WVN6 248 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 SORCS1Q8WY21 1168 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 SCMH1Q96GD3 660 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 EPYCQ99645 322 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 ECHDC1Q9NTX5 307 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 PDRG1Q9NUG6 133 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 CTNNA3Q9UI47 895 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 PYCARDQ9ULZ3 195 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 NFS1Q9Y697 457 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 ADGRL3Q9HAR2 1447 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 UTYO14607 1347 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 NPHP3Q7Z494 1330 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 LRRC37A3O60309 1634 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 WDR81Q562E7 1941 aa4.17□□□□□ -1.74
SMCHD1-208ENST00000583344 TOPAZ1Q8N9V7 1692 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 CEMIPQ8WUJ3 1361 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 ADAMTS13Q76LX8 1427 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 ACKR2O00590 384 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 CTAGE5O15320 804 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 SKAP2O75563 359 aaPredicted RBP4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 TFRCP02786 760 aaKnown RBP4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 CSF1P09603 554 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 CASTP20810 708 aaKnown RBP4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 SSTR2P30874 369 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 FMO4P31512 558 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 CHKAP35790 457 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 GRK6P43250 576 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 MAPK9P45984 424 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 GPR12P47775 334 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 MTNR1AP48039 350 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 PEX5P50542 639 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 ZNF75DP51815 510 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 KRTAP10-12P60413 245 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 CBX1P83916 185 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 GABPB1Q06547 395 aaPredicted RBP4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 ST3GAL1Q11201 340 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 CAPSQ13938 189 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 IL13RA2Q14627 380 aa4.16□□□□□ -1.74
SMCHD1-208ENST00000583344 ADCK5Q3MIX3 580 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms