RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 STARD6P59095 220 aa25.08■■□□□ 1.6
SHMT1-207ENST00000580002 STARD3Q14849 445 aa25.08■■□□□ 1.6
SHMT1-207ENST00000580002 PIP5KL1Q5T9C9 394 aa25.08■■□□□ 1.6
SHMT1-207ENST00000580002 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP25.08■■□□□ 1.6
SHMT1-207ENST00000580002 MARK2Q7KZI7 788 aaKnown RBP25.08■■□□□ 1.6
SHMT1-207ENST00000580002 GJD3Q8N144 294 aa25.08■■□□□ 1.6
SHMT1-207ENST00000580002 NDUFAF2Q8N183 169 aa25.08■■□□□ 1.6
SHMT1-207ENST00000580002 RIMKLBQ9ULI2 386 aa25.08■■□□□ 1.6
SHMT1-207ENST00000580002 PAMP19021 973 aa25.07■■□□□ 1.6
SHMT1-207ENST00000580002 MMP12P39900 470 aa25.07■■□□□ 1.6
SHMT1-207ENST00000580002 SLC1A2P43004 574 aa25.07■■□□□ 1.6
SHMT1-207ENST00000580002 BMPR2Q13873 1038 aa25.07■■□□□ 1.6
SHMT1-207ENST00000580002 PACS1Q6VY07 963 aa25.07■■□□□ 1.6
SHMT1-207ENST00000580002 DPPA4Q7L190 304 aa25.07■■□□□ 1.6
SHMT1-207ENST00000580002 ACVR1CQ8NER5 493 aa25.07■■□□□ 1.6
SHMT1-207ENST00000580002 PBXIP1Q96AQ6 731 aa25.07■■□□□ 1.6
SHMT1-207ENST00000580002 ATXN7L3BQ96GX2 97 aa25.07■■□□□ 1.6
SHMT1-207ENST00000580002 MFSD1Q9H3U5 465 aa25.07■■□□□ 1.6
SHMT1-207ENST00000580002 SLC24A2Q9UI40 661 aa25.07■■□□□ 1.6
SHMT1-207ENST00000580002 MMP17Q9ULZ9 603 aa25.07■■□□□ 1.6
SHMT1-207ENST00000580002 COQ6Q9Y2Z9 468 aa25.07■■□□□ 1.6
SHMT1-207ENST00000580002 KANSL1LA0AUZ9 987 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 AREL1O15033 823 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 SLC7A4O43246 635 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 GM2AP17900 193 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 MC4RP32245 332 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 TAS2R38P59533 333 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 LAMB3Q13751 1172 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 THOC5Q13769 683 aaKnown RBP25.06■■□□□ 1.6
SHMT1-207ENST00000580002 ZNF776Q68DI1 518 aaPredicted RBP25.06■■□□□ 1.6
SHMT1-207ENST00000580002 ZNF470Q6ECI4 717 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 FAM151BQ6UXP7 276 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 STRA8Q7Z7C7 330 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 SLC26A11Q86WA9 606 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 PIANPQ8IYJ0 282 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 HDDC3Q8N4P3 179 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 OR4L1Q8NH43 312 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 ACBD3Q9H3P7 528 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 IL26Q9NPH9 171 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 DYRK4Q9NR20 520 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 FAM53CQ9NYF3 392 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 PKP3Q9Y446 797 aa25.06■■□□□ 1.6
SHMT1-207ENST00000580002 RNASEH1O60930 286 aaKnown RBP25.05■■□□□ 1.6
SHMT1-207ENST00000580002 AHSGP02765 367 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 NEK3P51956 506 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 STC1P52823 247 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 PGGT1BP53609 377 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 AGBL4Q5VU57 503 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 FAM46CQ5VWP2 391 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 LIPIQ6XZB0 460 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 TRMT11Q7Z4G4 463 aaKnown RBP25.05■■□□□ 1.6
SHMT1-207ENST00000580002 TDRPQ86YL5 185 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 CBARPQ8N350 705 aaPredicted RBP25.05■■□□□ 1.6
SHMT1-207ENST00000580002 PEX13Q92968 403 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 PPP1R16AQ96I34 528 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 HDAC8Q9BY41 377 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 FBXO6Q9NRD1 293 aaPredicted RBP25.05■■□□□ 1.6
SHMT1-207ENST00000580002 PSMC3IPQ9P2W1 217 aaPredicted RBP25.05■■□□□ 1.6
SHMT1-207ENST00000580002 NOVA2Q9UNW9 492 aaKnown RBP25.05■■□□□ 1.6
SHMT1-207ENST00000580002 A0A1W2PPM1 405 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 RGS16O15492 202 aaPredicted RBP25.05■■□□□ 1.6
SHMT1-207ENST00000580002 OPA1O60313 960 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 CDH16O75309 829 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 IVLP07476 585 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 INHBAP08476 426 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 CYP2A6P11509 494 aaPredicted RBP25.05■■□□□ 1.6
SHMT1-207ENST00000580002 CREB1P16220 341 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 UGT1A6P19224 532 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 UGT1A1P22309 533 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 UGT1A4P22310 534 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 UGT1A3P35503 534 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 UGT1A5P35504 534 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 ETV3P41162 512 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 E2F5Q15329 346 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 CRY1Q16526 586 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 TMEM31Q5JXX7 168 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 ARMC3Q5W041 872 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 PSAPL1Q6NUJ1 521 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 TRIM67Q6ZTA4 783 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 Q6ZVL8 140 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 MZB1Q8WU39 189 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 CDKL2Q92772 493 aa25.05■■□□□ 1.6
SHMT1-207ENST00000580002 CCDC97Q96F63 343 aaPredicted RBP25.05■■□□□ 1.6
SHMT1-207ENST00000580002 TCRBV21S2A2A0A5A6 115 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 CD3EAPO15446 510 aaKnown RBP25.04■■□□□ 1.6
SHMT1-207ENST00000580002 MMP20O60882 483 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 HAUS5O94927 633 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 FOXN2P32314 431 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 LIG3P49916 1009 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 ARHGEF7Q14155 803 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 TNFAIP8L3Q5GJ75 292 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 EOGTQ5NDL2 527 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 ERAP2Q6P179 960 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 CNTN4Q8IWV2 1026 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 OTUD6BQ8N6M0 293 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 NAT14Q8WUY8 206 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 SCAMP4Q969E2 229 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 MRGPRX1Q96LB2 322 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 TBC1D17Q9HA65 648 aa25.04■■□□□ 1.6
SHMT1-207ENST00000580002 FETUBQ9UGM5 382 aa25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms