RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 HUS1O60921 280 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 GPR32O75388 356 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 PFKMP08237 780 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 ARF4P18085 180 aaPredicted RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 IFNA8P32881 189 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 CLK3P49761 638 aaKnown RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 HNRNPFP52597 415 aaKnown RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 ARPP19P56211 112 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 ILF2Q12905 390 aaKnown RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 MXD4Q14582 209 aaPredicted RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 SNX17Q15036 470 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 VPS26BQ4G0F5 336 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 AASDHQ4L235 1098 aaPredicted RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 TMEM236Q5W0B7 351 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 KIAA0408Q6ZU52 694 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 C11orf74Q86VG3 221 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 SLC41A1Q8IVJ1 513 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 TOP1MTQ969P6 601 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 PPP1R16BQ96T49 567 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 DPP3Q9NY33 737 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 KLQ9UEF7 1012 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 TNFSF13BQ9Y275 285 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 NLRC5Q86WI3 1866 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 A0A087WZ62 844 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 NEMP2A6NFY4 417 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 BCAS1O75363 584 aaPredicted RBP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 GSRP00390 522 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 MBL2P11226 248 aaPredicted RBP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 BMP2P12643 396 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 IGFBP6P24592 240 aaPredicted RBP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 AP3M2P53677 418 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 TNFAIP2Q03169 654 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 ZNF460Q14592 562 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 KCTD2Q14681 263 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 SPCS2Q15005 226 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 ATF7IP2Q5U623 682 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 FAM117BQ6P1L5 589 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 NEK5Q6P3R8 708 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 ZYG11AQ6WRX3 759 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 KDELC2Q7Z4H8 507 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 R3HCC1LQ7Z5L2 792 aaKnown RBP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 THAP5Q7Z6K1 395 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 ZNF467Q7Z7K2 595 aaPredicted RBP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 ITIH5Q86UX2 942 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 FSTL5Q8N475 847 aaPredicted RBP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 MCFD2Q8NI22 146 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 FAM110BQ8TC76 370 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 FIG4Q92562 907 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 PROX1Q92786 737 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 TUBGCP3Q96CW5 907 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 FDXACB1Q9BRP7 624 aaPredicted RBP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 RMND5AQ9H871 391 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 NANOGQ9H9S0 305 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 ZNF221Q9UK13 617 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 ADAM28Q9UKQ2 775 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 SCN10AQ9Y5Y9 1956 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 XIRP2A4UGR9 3374 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 LACTBL1A8MY62 500 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 GRID2O43424 1007 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 TSPAN1O60635 241 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 MMP3P08254 477 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 IL12AP29459 219 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 KRT6CP48668 564 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 EFNA5P52803 228 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 PLA2G16P53816 162 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 GRM3Q14832 879 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 PPP1R3AQ16821 1122 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 SMU1Q2TAY7 513 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 WDR45BQ5MNZ6 344 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 MORN1Q5T089 497 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 AGAP7PQ5VUJ5 663 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 FAM131BQ86XD5 332 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 ZBTB8OSQ8IWT0 167 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 SCUBE3Q8IX30 993 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 GPRC5AQ8NFJ5 357 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 G3V2L1 256 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 PPEF2O14830 753 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 MSI1O43347 362 aaKnown RBP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 ABCB7O75027 752 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 FYNP06241 537 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 ARSAP15289 507 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 SELENBP1Q13228 472 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 ZFP69Q49AA0 526 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.58□□□□□ -0.888e-6■■■■■ 27.9
CCDC40-212ENST00000574799 DCLRE1AQ6PJP8 1040 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 RPS27LQ71UM5 84 aaKnown RBP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 ZDHHC13Q8IUH4 622 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 LRRC49Q8IUZ0 686 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 CMTR2Q8IYT2 770 aaKnown RBP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 TMEM40Q8WWA1 233 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 PIWIL1Q96J94 861 aaKnown RBP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 TUBA1CQ9BQE3 449 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 IRF2BPLQ9H1B7 796 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.58□□□□□ -0.88
CCDC40-212ENST00000574799 DSEQ9UL01 958 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 SNX9Q9Y5X1 595 aa9.58□□□□□ -0.88
CCDC40-212ENST00000574799 GAS2O43903 313 aaKnown RBP9.57□□□□□ -0.88
CCDC40-212ENST00000574799 NDUFS2O75306 463 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms