RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 PGAP3Q96FM1 320 aaPredicted RBP11.07□□□□□ -0.64
VPS53-207ENST00000570510 EXOC2Q96KP1 924 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 RETREG1Q9H6L5 497 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 ACSS2Q9NR19 701 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 GOLGA6AQ9NYA3 693 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 RCOR3Q9P2K3 495 aaPredicted RBP11.07□□□□□ -0.64
VPS53-207ENST00000570510 CFAP69A5D8W1 941 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 TRIM49BA6NDI0 452 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 INSIG1O15503 277 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 DPM1O60762 260 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 DLGAP3O95886 979 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 FURINP09958 794 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 TRIM23P36406 574 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 CCL11P51671 97 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 POLR2LP62875 67 aaKnown RBP11.06□□□□□ -0.64
VPS53-207ENST00000570510 CTBSQ01459 385 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 PTK2Q05397 1052 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 SEMA5AQ13591 1074 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 INO80DQ53TQ3 878 aaPredicted RBP11.06□□□□□ -0.64
VPS53-207ENST00000570510 OTUD1Q5VV17 481 aaPredicted RBP11.06□□□□□ -0.64
VPS53-207ENST00000570510 WDR74Q6RFH5 385 aaPredicted RBP11.06□□□□□ -0.64
VPS53-207ENST00000570510 PHLDB2Q86SQ0 1253 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 NRROSQ86YC3 692 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 APLFQ8IW19 511 aaPredicted RBP11.06□□□□□ -0.64
VPS53-207ENST00000570510 WDTC1Q8N5D0 677 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 GALNT6Q8NCL4 622 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 SEC14L1Q92503 715 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 RNF31Q96EP0 1072 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 TCTN2Q96GX1 697 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 ZNF641Q96N77 438 aaPredicted RBP11.06□□□□□ -0.64
VPS53-207ENST00000570510 MFRPQ9BY79 579 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 NDFIP2Q9NV92 336 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 LUZP4Q9P127 313 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 ZNF212Q9UDV6 495 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 SUFUQ9UMX1 484 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 ZNF451Q9Y4E5 1061 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS53-207ENST00000570510 CSMD1Q96PZ7 3565 aa11.06□□□□□ -0.64
VPS53-207ENST00000570510 A8MX80 341 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 SORBS2O94875 1100 aaKnown RBP11.05□□□□□ -0.64
VPS53-207ENST00000570510 SERPINA4P29622 427 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 NR6A1Q15406 480 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 CAMK4Q16566 473 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 ZRANB3Q5FWF4 1079 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 KLHL10Q6JEL2 608 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 ARHGAP22Q7Z5H3 698 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 NT5C3BQ969T7 300 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 SH3KBP1Q96B97 665 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 ATP13A3Q9H7F0 1226 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 TMEM248Q9NWD8 314 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 PDP2Q9P2J9 529 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 LNPEPQ9UIQ6 1025 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 PADI1Q9ULC6 663 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 PCDHGC3Q9UN70 934 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 CTNND2Q9UQB3 1225 aa11.05□□□□□ -0.64
VPS53-207ENST00000570510 GOLGA8SH3BPF8 625 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 BIN1O00499 593 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 KIAA0754O94854 1291 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 CEACAM5P06731 702 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 ADCY8P40145 1251 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 ATP11AP98196 1134 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 HHEXQ03014 270 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 NFATC2Q13469 925 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 DNASE1L3Q13609 305 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 CHRNA6Q15825 494 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 PTPN20Q4JDL3 420 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 PRR30Q53SZ7 412 aaPredicted RBP11.04□□□□□ -0.64
VPS53-207ENST00000570510 DENND2CQ68D51 928 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 JMJD6Q6NYC1 403 aaPredicted RBP11.04□□□□□ -0.64
VPS53-207ENST00000570510 DOK6Q6PKX4 331 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 LIPIQ6XZB0 460 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 CAMK1DQ8IU85 385 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 PLXDC1Q8IUK5 500 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 MSANTD4Q8NCY6 345 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 ENOX1Q8TC92 643 aaKnown RBP11.04□□□□□ -0.64
VPS53-207ENST00000570510 THAP4Q8WY91 577 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 C18orf8Q96DM3 657 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 TBC1D31Q96DN5 1066 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 NUS1Q96E22 293 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 ELMO2Q96JJ3 720 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 CFAP57Q96MR6 1250 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 TUBGCP5Q96RT8 1024 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 TRIM55Q9BYV6 548 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 ANO10Q9NW15 660 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 KCTD5Q9NXV2 234 aa11.04□□□□□ -0.64
VPS53-207ENST00000570510 PCDHGA9Q9Y5G4 932 aaKnown RBP11.04□□□□□ -0.64
VPS53-207ENST00000570510 LRP4O75096 1905 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 TSPAN11A1L157 253 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 ANKUB1A6NFN9 424 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 ARGFXA6NJG6 315 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 RASA4BC9J798 803 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 RASA4O43374 803 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 BUB1BO60566 1050 aaPredicted RBP11.03□□□□□ -0.64
VPS53-207ENST00000570510 NDUFA10O95299 355 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 MAP3K6O95382 1288 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 RECKO95980 971 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 MT-ND3P03897 115 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 NFKBIAP25963 317 aa11.03□□□□□ -0.64
VPS53-207ENST00000570510 EEF1GP26641 437 aaKnown RBP11.03□□□□□ -0.64
VPS53-207ENST00000570510 GARSP41250 739 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms