RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 MT-ND3P03897 115 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 ELFN1P0C7U0 828 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 ITGA3P26006 1051 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 ADCY8P40145 1251 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 ACTR1BP42025 376 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 ITGA1P56199 1179 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 ACTR1AP61163 376 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 FOXM1Q08050 763 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 CHAF1BQ13112 559 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 SLC25A52Q3SY17 297 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.01■□□□□ 0.47
CLK3-227ENST00000570296 ERICH6BQ5W0A0 696 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 NLRP14Q86W24 1093 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 ZDHHC17Q8IUH5 632 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 IQCKQ8N0W5 287 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 RBMXL3Q8N7X1 1067 aaKnown RBP18.01■□□□□ 0.47
CLK3-227ENST00000570296 TBCBQ99426 244 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 ASF1BQ9NVP2 202 aa18.01■□□□□ 0.47
CLK3-227ENST00000570296 G3BP2Q9UN86 482 aaKnown RBP18.01■□□□□ 0.47
CLK3-227ENST00000570296 RAMP2O60895 175 aa18■□□□□ 0.47
CLK3-227ENST00000570296 KIAA0754O94854 1291 aa18■□□□□ 0.47
CLK3-227ENST00000570296 NDUFA10O95299 355 aa18■□□□□ 0.47
CLK3-227ENST00000570296 ERBB2P04626 1255 aa18■□□□□ 0.47
CLK3-227ENST00000570296 RHOQP17081 205 aa18■□□□□ 0.47
CLK3-227ENST00000570296 RNASE9P60153 205 aaKnown RBP18■□□□□ 0.47
CLK3-227ENST00000570296 RALGDSQ12967 914 aa18■□□□□ 0.47
CLK3-227ENST00000570296 IL11RAQ14626 422 aa18■□□□□ 0.47
CLK3-227ENST00000570296 ZRSR2Q15696 482 aaKnown RBP18■□□□□ 0.47
CLK3-227ENST00000570296 LIPIQ6XZB0 460 aa18■□□□□ 0.47
CLK3-227ENST00000570296 GDF7Q7Z4P5 450 aa18■□□□□ 0.47
CLK3-227ENST00000570296 DNAAF5Q86Y56 855 aa18■□□□□ 0.47
CLK3-227ENST00000570296 PELI3Q8N2H9 469 aa18■□□□□ 0.47
CLK3-227ENST00000570296 SFRP1Q8N474 314 aa18■□□□□ 0.47
CLK3-227ENST00000570296 C1orf131Q8NDD1 294 aaKnown RBP18■□□□□ 0.47
CLK3-227ENST00000570296 SLC37A2Q8TED4 501 aa18■□□□□ 0.47
CLK3-227ENST00000570296 CT55Q8WUE5 264 aa18■□□□□ 0.47
CLK3-227ENST00000570296 TSG101Q99816 390 aa18■□□□□ 0.47
CLK3-227ENST00000570296 TEX101Q9BY14 249 aa18■□□□□ 0.47
CLK3-227ENST00000570296 TMEM248Q9NWD8 314 aa18■□□□□ 0.47
CLK3-227ENST00000570296 DNAI1Q9UI46 699 aa18■□□□□ 0.47
CLK3-227ENST00000570296 PCSK5Q92824 1860 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 ARGFXA6NJG6 315 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 BUB1BO60566 1050 aaPredicted RBP17.99■□□□□ 0.47
CLK3-227ENST00000570296 IVLP07476 585 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 PFKFB1P16118 471 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 GM2AP17900 193 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 EPHA4P54764 986 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 NRG1Q02297 640 aaPredicted RBP17.99■□□□□ 0.47
CLK3-227ENST00000570296 C8orf34Q49A92 452 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 AFMIDQ63HM1 303 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 SPNS3Q6ZMD2 512 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 XYLT1Q86Y38 959 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 RANBP9Q96S59 729 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 GPR87Q9BY21 358 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 GTPBP4Q9BZE4 634 aaKnown RBP17.99■□□□□ 0.47
CLK3-227ENST00000570296 EPB41L1Q9H4G0 881 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 SYNCQ9H7C4 482 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 ACP6Q9NPH0 428 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 LHX3Q9UBR4 397 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 KLHL3Q9UH77 587 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 ITGB1BP2Q9UKP3 347 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 SLC17A4Q9Y2C5 497 aa17.99■□□□□ 0.47
CLK3-227ENST00000570296 MN1Q10571 1320 aaPredicted RBP17.98■□□□□ 0.47
CLK3-227ENST00000570296 PRSS44E7EML9 344 aa17.98■□□□□ 0.47
CLK3-227ENST00000570296 PTGER4P35408 488 aa17.98■□□□□ 0.47
CLK3-227ENST00000570296 TESK1Q15569 626 aa17.98■□□□□ 0.47
CLK3-227ENST00000570296 MANEALQ5VSG8 457 aa17.98■□□□□ 0.47
CLK3-227ENST00000570296 DPPA4Q7L190 304 aa17.98■□□□□ 0.47
CLK3-227ENST00000570296 SYVN1Q86TM6 617 aa17.98■□□□□ 0.47
CLK3-227ENST00000570296 ZSWIM9Q86XI8 627 aa17.98■□□□□ 0.47
CLK3-227ENST00000570296 RASGRP3Q8IV61 690 aa17.98■□□□□ 0.47
CLK3-227ENST00000570296 SMYD4Q8IYR2 804 aaPredicted RBP17.98■□□□□ 0.47
CLK3-227ENST00000570296 EHBP1Q8NDI1 1231 aa17.98■□□□□ 0.47
CLK3-227ENST00000570296 BRD8Q9H0E9 1235 aa17.98■□□□□ 0.47
CLK3-227ENST00000570296 SARS2Q9NP81 518 aaKnown RBP17.98■□□□□ 0.47
CLK3-227ENST00000570296 LHX9Q9NQ69 397 aa17.98■□□□□ 0.47
CLK3-227ENST00000570296 LNPEPQ9UIQ6 1025 aa17.98■□□□□ 0.47
CLK3-227ENST00000570296 PCDHGC3Q9UN70 934 aa17.98■□□□□ 0.47
CLK3-227ENST00000570296 A0A1B0GTL3 188 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 A0A1B0GVL5 298 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 HHEXQ03014 270 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 PTPN20Q4JDL3 420 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 RWDD4Q6NW29 188 aaKnown RBP17.97■□□□□ 0.47
CLK3-227ENST00000570296 BNIPLQ7Z465 357 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 PLXDC1Q8IUK5 500 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 PASD1Q8IV76 773 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 NETO2Q8NC67 525 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 PTCD2Q8WV60 388 aaKnown RBP17.97■□□□□ 0.47
CLK3-227ENST00000570296 SH3KBP1Q96B97 665 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 RNF31Q96EP0 1072 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 EXOC2Q96KP1 924 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 TUBGCP5Q96RT8 1024 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 STN1Q9H668 368 aaKnown RBP17.97■□□□□ 0.47
CLK3-227ENST00000570296 KCTD5Q9NXV2 234 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 OR12D3Q9UGF7 316 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 HPSEQ9Y251 543 aa17.97■□□□□ 0.47
CLK3-227ENST00000570296 SSU72P8A0A1W2PR75 194 aa17.96■□□□□ 0.47
CLK3-227ENST00000570296 PTPN4P29074 926 aa17.96■□□□□ 0.47
CLK3-227ENST00000570296 CDK3Q00526 305 aa17.96■□□□□ 0.47
CLK3-227ENST00000570296 ACOX1Q15067 660 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms