RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 GOLGA6BA6NDN3 693 aa16.15■□□□□ 0.18
CLK3-223ENST00000568488 TCP11X1B4DZS4 312 aa16.15■□□□□ 0.18
CLK3-223ENST00000568488 GOLGA6DP0CG33 693 aa16.15■□□□□ 0.18
CLK3-223ENST00000568488 PNMA6AP0CW24 399 aaPredicted RBP16.15■□□□□ 0.18
CLK3-223ENST00000568488 SCNN1AP37088 669 aa16.15■□□□□ 0.18
CLK3-223ENST00000568488 ADCY8P40145 1251 aa16.15■□□□□ 0.18
CLK3-223ENST00000568488 GABRB2P47870 512 aa16.15■□□□□ 0.18
CLK3-223ENST00000568488 FOXM1Q08050 763 aa16.15■□□□□ 0.18
CLK3-223ENST00000568488 MAP7Q14244 749 aa16.15■□□□□ 0.18
CLK3-223ENST00000568488 C6orf15Q6UXA7 325 aaPredicted RBP16.15■□□□□ 0.18
CLK3-223ENST00000568488 ULBP3Q9BZM4 244 aa16.15■□□□□ 0.18
CLK3-223ENST00000568488 NOL6Q9H6R4 1146 aaKnown RBP16.15■□□□□ 0.18
CLK3-223ENST00000568488 GOLGA6AQ9NYA3 693 aa16.15■□□□□ 0.18
CLK3-223ENST00000568488 DONSONQ9NYP3 566 aa16.15■□□□□ 0.18
CLK3-223ENST00000568488 UBA2Q9UBT2 640 aaPredicted RBP16.15■□□□□ 0.18
CLK3-223ENST00000568488 TMEM59LQ9UK28 342 aa16.15■□□□□ 0.18
CLK3-223ENST00000568488 RASA4BC9J798 803 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 RASA4O43374 803 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 ZNF28P17035 718 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 GM2AP17900 193 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 ERCC5P28715 1186 aaPredicted RBP16.14■□□□□ 0.17
CLK3-223ENST00000568488 SERPINA4P29622 427 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 CLCN1P35523 988 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 MAPK9P45984 424 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 PGDP52209 483 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 MARSP56192 900 aaKnown RBP16.14■□□□□ 0.17
CLK3-223ENST00000568488 STX17P56962 302 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 INPP5JQ15735 1006 aaPredicted RBP16.14■□□□□ 0.17
CLK3-223ENST00000568488 C15orf59Q2T9L4 293 aaPredicted RBP16.14■□□□□ 0.17
CLK3-223ENST00000568488 C1QL3Q5VWW1 255 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 AFMIDQ63HM1 303 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 DENND2CQ68D51 928 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 DOK6Q6PKX4 331 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 WDR74Q6RFH5 385 aaPredicted RBP16.14■□□□□ 0.17
CLK3-223ENST00000568488 GBP6Q6ZN66 633 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 GALNT6Q8NCL4 622 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 PDCD6IPQ8WUM4 868 aaKnown RBP16.14■□□□□ 0.17
CLK3-223ENST00000568488 NUS1Q96E22 293 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 FRMD8Q9BZ67 464 aaPredicted RBP16.14■□□□□ 0.17
CLK3-223ENST00000568488 ATP13A3Q9H7F0 1226 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 NEU3Q9UQ49 428 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 CTNND2Q9UQB3 1225 aa16.14■□□□□ 0.17
CLK3-223ENST00000568488 BICDL2A1A5D9 508 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 FOXN3O00409 490 aaPredicted RBP16.13■□□□□ 0.17
CLK3-223ENST00000568488 POLR2LP62875 67 aaKnown RBP16.13■□□□□ 0.17
CLK3-223ENST00000568488 PRR30Q53SZ7 412 aaPredicted RBP16.13■□□□□ 0.17
CLK3-223ENST00000568488 DPPA4Q7L190 304 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 SRLQ86TD4 932 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 CCDC185Q8N715 623 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 SLC37A2Q8TED4 501 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 STAMBPL1Q96FJ0 436 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 TCTN2Q96GX1 697 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 TUBGCP5Q96RT8 1024 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 TEX101Q9BY14 249 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 TRIM55Q9BYV6 548 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 SLC29A3Q9BZD2 475 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 METTL5Q9NRN9 209 aaKnown RBP16.13■□□□□ 0.17
CLK3-223ENST00000568488 LUZP4Q9P127 313 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 RCOR3Q9P2K3 495 aaPredicted RBP16.13■□□□□ 0.17
CLK3-223ENST00000568488 ERRFI1Q9UJM3 462 aaPredicted RBP16.13■□□□□ 0.17
CLK3-223ENST00000568488 KCND3Q9UK17 655 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 AJAP1Q9UKB5 411 aaPredicted RBP16.13■□□□□ 0.17
CLK3-223ENST00000568488 C2CD3Q4AC94 2353 aa16.13■□□□□ 0.17
CLK3-223ENST00000568488 TNRC6AQ8NDV7 1962 aaKnown RBP16.13■□□□□ 0.17
CLK3-223ENST00000568488 PRRC2CQ9Y520 2896 aaKnown RBP16.12■□□□□ 0.17
CLK3-223ENST00000568488 A6NCN8 305 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 CREG1O75629 220 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 MAP3K6O95382 1288 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 EPHB2P29323 1055 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 PPP1R2P41236 205 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 YBEYP58557 167 aaPredicted RBP16.12■□□□□ 0.17
CLK3-223ENST00000568488 CDK3Q00526 305 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 BCL2L1Q07817 233 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 NFATC2Q13469 925 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 SEMA5AQ13591 1074 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 TAF3Q5VWG9 929 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 APLFQ8IW19 511 aaPredicted RBP16.12■□□□□ 0.17
CLK3-223ENST00000568488 RTL3Q8N8U3 475 aaKnown RBP16.12■□□□□ 0.17
CLK3-223ENST00000568488 RXFP2Q8WXD0 754 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 ELMO2Q96JJ3 720 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 SLC25A23Q9BV35 468 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 GDPD2Q9HCC8 539 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 DNAJC12Q9UKB3 198 aa16.12■□□□□ 0.17
CLK3-223ENST00000568488 WIPF3A6NGB9 483 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 J3KR12 359 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 SORBS2O94875 1100 aaKnown RBP16.11■□□□□ 0.17
CLK3-223ENST00000568488 LDLRP01130 860 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 CCNYL3P0C7X3 344 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 SDC4P31431 198 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 CASP14P31944 242 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 CDH5P33151 784 aaPredicted RBP16.11■□□□□ 0.17
CLK3-223ENST00000568488 RGRP47804 291 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 FASLGP48023 281 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 CCL11P51671 97 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 BPIFB4P59827 614 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 EXOC3L4Q17RC7 722 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 PARP15Q460N3 678 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 CCDC14Q49A88 953 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 RAET1GQ6H3X3 334 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 MARK2Q7KZI7 788 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms