RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	RFX6	Q8HWS3	928 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	CCDC13	Q8IYE1	715 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	CCDC170	Q8IYT3	715 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	NRSN1	Q8IZ57	195 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	PELI3	Q8N2H9	469 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	ARL10	Q8N8L6	244 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	TC2N	Q8N9U0	490 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	FAM46D	Q8NEK8	389 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	OR6C4	Q8NGE1	309 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	WDR48	Q8TAF3	677 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	HNRNPLL	Q8WVV9	542 aa	Known RBP	6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	OR1E3	Q8WZA6	343 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	GRAMD1A	Q96CP6	724 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	HDAC11	Q96DB2	347 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	DTD2	Q96FN9	168 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	PANX2	Q96RD6	677 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	RBM15	Q96T37	977 aa	Known RBP eCLIP	6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	LGMN	Q99538	433 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	TEX101	Q9BY14	249 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	BRD8	Q9H0E9	1235 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	RBSN	Q9H1K0	784 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	ABCG8	Q9H221	673 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	WDR26	Q9H7D7	661 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	MRPL40	Q9NQ50	206 aa	Known RBP	6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	SIRPG	Q9P1W8	387 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	MOSPD1	Q9UJG1	213 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	DNPEP	Q9ULA0	475 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	RPL26L1	Q9UNX3	145 aa	Known RBP	6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	GPSM3	Q9Y4H4	160 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	TTLL3	Q9Y4R7	772 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	PCDHA13	Q9Y5I0	950 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	ALG6	Q9Y672	507 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	PIKFYVE	Q9Y2I7	2098 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	CFAP47	Q6ZTR5	3102 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635		A0A087WV48	116 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635		A0A0U1RQS6	177 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	PRSS38	A1L453	326 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	GOLGA6C	A6NDK9	693 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	GOLGA6B	A6NDN3	693 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	KCNK1	O00180	336 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	SPOP	O43791	374 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	BRINP1	O60477	761 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	USP12	O75317	370 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	TCEA3	O75764	348 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	FUCA1	P04066	466 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	KRT1	P04264	644 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	HLA-DQB2	P05538	268 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	CEACAM5	P06731	702 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	MMP2	P08253	660 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	GOLGA6D	P0CG33	693 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	ACTN2	P35609	894 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	CYLC1	P35663	651 aa	Predicted RBP	6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	GPR1	P46091	355 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	LSS	P48449	732 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	NR2C2	P49116	596 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	ZNF75D	P51815	510 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	IFI35	P80217	286 aa	Predicted RBP	6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	TFDP2	Q14188	446 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	SPA17	Q15506	151 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	ISX	Q2M1V0	245 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	LRRC66	Q68CR7	880 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	RAET1G	Q6H3X3	334 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	NPNT	Q6UXI9	565 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	ADAMTSL4	Q6UY14	1074 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	RBM44	Q6ZP01	1051 aa	Known RBP	6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	RFLNA	Q6ZTI6	216 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	BZW1	Q7L1Q6	419 aa	Known RBP	6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	HEATR4	Q86WZ0	1026 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	RAVER1	Q8IY67	606 aa	Known RBP	6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	RCOR2	Q8IZ40	523 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	LSMEM2	Q8N112	164 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	CNTD1	Q8N815	330 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	GPR156	Q8NFN8	814 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	GPBAR1	Q8TDU6	330 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	FGF11	Q92914	225 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	AP2M1	Q96CW1	435 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	PDXP	Q96GD0	296 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	HIC2	Q96JB3	615 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	SMIM14	Q96QK8	99 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	CCDC3	Q9BQI4	270 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	MLPH	Q9BV36	600 aa	Predicted RBP	6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	ADGRE3	Q9BY15	652 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	FRMD8	Q9BZ67	464 aa	Predicted RBP	6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	TMEM168	Q9H0V1	697 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	DPEP2	Q9H4A9	486 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	POLR1B	Q9H9Y6	1135 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	PCDH9	Q9HC56	1237 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	FGF22	Q9HCT0	170 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	LUC7L	Q9NQ29	371 aa	Known RBP	6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	GOLGA6A	Q9NYA3	693 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	LHX6	Q9UPM6	363 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	HYOU1	Q9Y4L1	999 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635	PCDHB1	Q9Y5F3	818 aa		6.9	□□□□□ -1.3
SF3B3-209	ENST00000567635		A0A0A6YYK5	440 aa	Predicted RBP	6.89	□□□□□ -1.31
SF3B3-209	ENST00000567635	CAPN8	A6NHC0	703 aa		6.89	□□□□□ -1.31
SF3B3-209	ENST00000567635	ANKRD66	B4E2M5	251 aa		6.89	□□□□□ -1.31
SF3B3-209	ENST00000567635	TMX2-CTNND1	H3BSU7	103 aa		6.89	□□□□□ -1.31
SF3B3-209	ENST00000567635	NTN3	O00634	580 aa	Predicted RBP	6.89	□□□□□ -1.31
SF3B3-209	ENST00000567635	PPP1R12A	O14974	1030 aa	Predicted RBP	6.89	□□□□□ -1.31
SF3B3-209	ENST00000567635	RRP8	O43159	456 aa	Known RBP	6.89	□□□□□ -1.31

Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms