RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 RSPH9Q9H1X1 276 aaPredicted RBP30.55■■■□□ 2.48
CTCF-203ENST00000566078 CATSPERZQ9NTU4 200 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 RNASEH1O60930 286 aaKnown RBP30.55■■■□□ 2.48
CTCF-203ENST00000566078 ADAM23O75077 832 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 HOXB2P14652 356 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 ARHGEF7Q14155 803 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 FAM46CQ5VWP2 391 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 ERAP2Q6P179 960 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 TRABD2AQ86V40 505 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 CACUL1Q86Y37 369 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 LMNTD2Q8IXW0 634 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 C2CD4AQ8NCU7 369 aaPredicted RBP30.55■■■□□ 2.48
CTCF-203ENST00000566078 MARCH4Q9P2E8 410 aaPredicted RBP30.55■■■□□ 2.48
CTCF-203ENST00000566078 NDRG2Q9UN36 371 aaKnown RBP30.55■■■□□ 2.48
CTCF-203ENST00000566078 SORCS3Q9UPU3 1222 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 TRIM49D1C9J1S8 452 aa30.54■■■□□ 2.48
CTCF-203ENST00000566078 MAN2B1O00754 1011 aa30.54■■■□□ 2.48
CTCF-203ENST00000566078 CNTFP26441 200 aa30.54■■■□□ 2.48
CTCF-203ENST00000566078 MC4RP32245 332 aa30.54■■■□□ 2.48
CTCF-203ENST00000566078 CSE1LP55060 971 aaKnown RBP30.54■■■□□ 2.48
CTCF-203ENST00000566078 CCINQ13939 588 aa30.54■■■□□ 2.48
CTCF-203ENST00000566078 FBXO43Q4G163 708 aa30.54■■■□□ 2.48
CTCF-203ENST00000566078 KIAA1211LQ6NV74 962 aa30.54■■■□□ 2.48
CTCF-203ENST00000566078 FBXL19Q6PCT2 694 aa30.54■■■□□ 2.48
CTCF-203ENST00000566078 DPPA4Q7L190 304 aa30.54■■■□□ 2.48
CTCF-203ENST00000566078 EXOC3L1Q86VI1 746 aa30.54■■■□□ 2.48
CTCF-203ENST00000566078 SRRM1Q8IYB3 904 aaKnown RBP30.54■■■□□ 2.48
CTCF-203ENST00000566078 FBXO5Q9UKT4 447 aa30.54■■■□□ 2.48
CTCF-203ENST00000566078 COL6A3P12111 3177 aa30.53■■■□□ 2.48
CTCF-203ENST00000566078 H7C0S8 307 aa30.53■■■□□ 2.48
CTCF-203ENST00000566078 PLK4O00444 970 aa30.53■■■□□ 2.48
CTCF-203ENST00000566078 CD3EAPO15446 510 aaKnown RBP30.53■■■□□ 2.48
CTCF-203ENST00000566078 SNRPAP09012 282 aaKnown RBP30.53■■■□□ 2.48
CTCF-203ENST00000566078 MMP12P39900 470 aa30.53■■■□□ 2.48
CTCF-203ENST00000566078 ABCG1P45844 678 aa30.53■■■□□ 2.48
CTCF-203ENST00000566078 SATB1Q01826 763 aa30.53■■■□□ 2.48
CTCF-203ENST00000566078 PTSQ03393 145 aa30.53■■■□□ 2.48
CTCF-203ENST00000566078 ATXN7L3BQ96GX2 97 aa30.53■■■□□ 2.48
CTCF-203ENST00000566078 C19orf43Q9BQ61 176 aa30.53■■■□□ 2.48
CTCF-203ENST00000566078 C1SP09871 688 aa30.52■■■□□ 2.48
CTCF-203ENST00000566078 ZNF30P17039 623 aa30.52■■■□□ 2.48
CTCF-203ENST00000566078 HPDP32754 393 aaPredicted RBP30.52■■■□□ 2.48
CTCF-203ENST00000566078 SPRP35270 261 aaPredicted RBP30.52■■■□□ 2.48
CTCF-203ENST00000566078 PEX6Q13608 980 aa30.52■■■□□ 2.48
CTCF-203ENST00000566078 FASTKD1Q53R41 847 aaKnown RBP30.52■■■□□ 2.48
CTCF-203ENST00000566078 MROH9Q5TGP6 573 aa30.52■■■□□ 2.48
CTCF-203ENST00000566078 MRNIPQ6NTE8 343 aa30.52■■■□□ 2.48
CTCF-203ENST00000566078 KIAA0408Q6ZU52 694 aa30.52■■■□□ 2.48
CTCF-203ENST00000566078 CILP2Q8IUL8 1156 aa30.52■■■□□ 2.48
CTCF-203ENST00000566078 GPR150Q8NGU9 434 aa30.52■■■□□ 2.48
CTCF-203ENST00000566078 OR2T3Q8NH03 318 aa30.52■■■□□ 2.48
CTCF-203ENST00000566078 RPLP0P6Q8NHW5 317 aa30.52■■■□□ 2.48
CTCF-203ENST00000566078 MTBPQ96DY7 904 aa30.52■■■□□ 2.48
CTCF-203ENST00000566078 FBXO6Q9NRD1 293 aaPredicted RBP30.52■■■□□ 2.48
CTCF-203ENST00000566078 A0A1W2PPM1 405 aa30.51■■■□□ 2.48
CTCF-203ENST00000566078 HMX2A2RU54 273 aa30.51■■■□□ 2.48
CTCF-203ENST00000566078 ITGA2BP08514 1039 aa30.51■■■□□ 2.48
CTCF-203ENST00000566078 ADRB3P13945 408 aa30.51■■■□□ 2.48
CTCF-203ENST00000566078 BPIP17213 487 aa30.51■■■□□ 2.48
CTCF-203ENST00000566078 COL9A1P20849 921 aa30.51■■■□□ 2.48
CTCF-203ENST00000566078 NEK3P51956 506 aa30.51■■■□□ 2.48
CTCF-203ENST00000566078 LIMK2P53671 638 aa30.51■■■□□ 2.48
CTCF-203ENST00000566078 RALGDSQ12967 914 aa30.51■■■□□ 2.48
CTCF-203ENST00000566078 CST6Q15828 149 aa30.51■■■□□ 2.48
CTCF-203ENST00000566078 ERN2Q76MJ5 926 aaKnown RBP30.51■■■□□ 2.48
CTCF-203ENST00000566078 LDB1Q86U70 411 aaPredicted RBP30.51■■■□□ 2.48
CTCF-203ENST00000566078 MCMBPQ9BTE3 642 aa30.51■■■□□ 2.48
CTCF-203ENST00000566078 ARHGEF3Q9NR81 526 aa30.51■■■□□ 2.48
CTCF-203ENST00000566078 ITM2BQ9Y287 266 aa30.51■■■□□ 2.48
CTCF-203ENST00000566078 MID1O15344 667 aa30.51■■■□□ 2.47
CTCF-203ENST00000566078 ADH1BP00325 375 aa30.51■■■□□ 2.47
CTCF-203ENST00000566078 AHSGP02765 367 aa30.51■■■□□ 2.47
CTCF-203ENST00000566078 PRSS56P0CW18 603 aa30.51■■■□□ 2.47
CTCF-203ENST00000566078 GABRB3P28472 473 aa30.51■■■□□ 2.47
CTCF-203ENST00000566078 FOXN2P32314 431 aa30.51■■■□□ 2.47
CTCF-203ENST00000566078 STC1P52823 247 aa30.51■■■□□ 2.47
CTCF-203ENST00000566078 COPAP53621 1224 aa30.51■■■□□ 2.47
CTCF-203ENST00000566078 XIAPP98170 497 aa30.51■■■□□ 2.47
CTCF-203ENST00000566078 SEMA3AQ14563 771 aa30.51■■■□□ 2.47
CTCF-203ENST00000566078 ZNF776Q68DI1 518 aaPredicted RBP30.51■■■□□ 2.47
CTCF-203ENST00000566078 ZNF852Q6ZMS4 543 aa30.51■■■□□ 2.47
CTCF-203ENST00000566078 HDAC8Q9BY41 377 aa30.51■■■□□ 2.47
CTCF-203ENST00000566078 A0A1W2PQF6 199 aa30.5■■■□□ 2.47
CTCF-203ENST00000566078 SPINT1O43278 529 aa30.5■■■□□ 2.47
CTCF-203ENST00000566078 NR1D1P20393 614 aa30.5■■■□□ 2.47
CTCF-203ENST00000566078 OGNP20774 298 aaKnown RBP30.5■■■□□ 2.47
CTCF-203ENST00000566078 SPAM1P38567 509 aa30.5■■■□□ 2.47
CTCF-203ENST00000566078 ZRANB3Q5FWF4 1079 aa30.5■■■□□ 2.47
CTCF-203ENST00000566078 FAM151BQ6UXP7 276 aa30.5■■■□□ 2.47
CTCF-203ENST00000566078 PNPLA1Q8N8W4 532 aa30.5■■■□□ 2.47
CTCF-203ENST00000566078 SGSM3Q96HU1 749 aa30.5■■■□□ 2.47
CTCF-203ENST00000566078 RHOJQ9H4E5 214 aa30.5■■■□□ 2.47
CTCF-203ENST00000566078 FBRSQ9HAH7 460 aa30.5■■■□□ 2.47
CTCF-203ENST00000566078 SENP1Q9P0U3 644 aa30.5■■■□□ 2.47
CTCF-203ENST00000566078 MT-ND3P03897 115 aa30.49■■■□□ 2.47
CTCF-203ENST00000566078 P2RY2P41231 377 aa30.49■■■□□ 2.47
CTCF-203ENST00000566078 CD151P48509 253 aa30.49■■■□□ 2.47
CTCF-203ENST00000566078 SUOXP51687 545 aa30.49■■■□□ 2.47
CTCF-203ENST00000566078 RPS14P62263 151 aaKnown RBP30.49■■■□□ 2.47
CTCF-203ENST00000566078 PRKCQQ04759 706 aa30.49■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms