RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ZNF599Q96NL3 588 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 NUDCD1Q96RS6 583 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 ARHGAP9Q9BRR9 750 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 GSDMCQ9BYG8 508 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 FRMD8Q9BZ67 464 aaPredicted RBP16.85■□□□□ 0.29
CLN3-211ENST00000564091 CLMPQ9H6B4 373 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 ZWILCHQ9H900 591 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 GOLGA6AQ9NYA3 693 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 MYO1AQ9UBC5 1043 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 MYO6Q9UM54 1294 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 PCDHGA4Q9Y5G9 962 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 HECTD1Q9ULT8 2610 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 NPIPB15A6NHN6 443 aaPredicted RBP16.84■□□□□ 0.29
CLN3-211ENST00000564091 H3BRJ5 948 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 SOCS5O75159 536 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 WISP1O95388 367 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 FAM87AP0C7U9 286 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 CD1CP29017 333 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 ZNF135P52742 658 aaPredicted RBP16.84■□□□□ 0.29
CLN3-211ENST00000564091 NFKB2Q00653 900 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 CTBSQ01459 385 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 BIRC2Q13490 618 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 NKAIN2Q5VXU1 208 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 RAET1GQ6H3X3 334 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 DOK6Q6PKX4 331 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 RFLNAQ6ZTI6 216 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 ZNF438Q7Z4V0 828 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 HSPH1Q92598 858 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 COL26A1Q96A83 441 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 ZNF653Q96CK0 615 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 TRIM4Q9C037 500 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 RTN4Q9NQC3 1192 aaKnown RBP16.84■□□□□ 0.29
CLN3-211ENST00000564091 TRNAU1APQ9NX07 287 aaKnown RBP16.84■□□□□ 0.29
CLN3-211ENST00000564091 AKAP7Q9P0M2 348 aaPredicted RBP16.84■□□□□ 0.29
CLN3-211ENST00000564091 PHTF1Q9UMS5 762 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 PLEKHM1Q9Y4G2 1056 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 MYO18BQ8IUG5 2567 aa16.84■□□□□ 0.29
CLN3-211ENST00000564091 IGHV5-10-1A0A0J9YXX1 117 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 A0A1W2PQ67 120 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 A0A1W2PQC6 194 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 MAFKO60675 156 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 ITGB2P05107 769 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 CYP2A6P11509 494 aaPredicted RBP16.83■□□□□ 0.28
CLN3-211ENST00000564091 GZMAP12544 262 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 CTPS1P17812 591 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 ITGB6P18564 788 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 MPSTP25325 297 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 HSPA9P38646 679 aaKnown RBP16.83■□□□□ 0.28
CLN3-211ENST00000564091 ADCY8P40145 1251 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 ARL4AP40617 200 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 DPYSL2Q16555 572 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 TBR1Q16650 682 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 TMCO3Q6UWJ1 677 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 POLNQ7Z5Q5 900 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 NAGSQ8N159 534 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 PMEPA1Q969W9 287 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 CCDC74BQ96LY2 380 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 CSPG4P5Q96PW8 444 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 SMIM14Q96QK8 99 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 MGME1Q9BQP7 344 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 FAM117AQ9C073 453 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 CD84Q9UIB8 345 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 SLC17A4Q9Y2C5 497 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 TMEM98Q9Y2Y6 226 aa16.83■□□□□ 0.28
CLN3-211ENST00000564091 HEMK1Q9Y5R4 338 aaPredicted RBP16.83■□□□□ 0.28
CLN3-211ENST00000564091 TLN1Q9Y490 2541 aaKnown RBP16.83■□□□□ 0.28
CLN3-211ENST00000564091 CYSRT1A8MQ03 144 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 PPM1DO15297 605 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 PGLSO95336 258 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 FGF3P11487 239 aaPredicted RBP16.82■□□□□ 0.28
CLN3-211ENST00000564091 SKILP12757 684 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 PCK1P35558 622 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 ARSDP51689 593 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 BOLA3Q53S33 107 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 TMEM164Q5U3C3 297 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 TXNRD3NBQ6F5E7 133 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 HTR3CQ8WXA8 447 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 SCRN2Q96FV2 425 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.82■□□□□ 0.28
CLN3-211ENST00000564091 AIPL1Q9NZN9 384 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 SCINQ9Y6U3 715 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 MAST4O15021 2626 aa16.82■□□□□ 0.28
CLN3-211ENST00000564091 PDHA1P08559 390 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 RARAP10276 462 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 CD82P27701 267 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 PRKCIP41743 596 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 ACTR1BP42025 376 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 GPR1P46091 355 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 ACTR1AP61163 376 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 KLHL30Q0D2K2 578 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 NR1D2Q14995 579 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 ARMC12Q5T9G4 340 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 MARC1Q5VT66 337 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 XKR5Q6UX68 686 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 TECPR1Q7Z6L1 1165 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 TRIM74Q86UV6 250 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 BBS5Q8N3I7 341 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 ATPAF2Q8N5M1 289 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 ZSCAN1Q8NBB4 408 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 NSMCE1Q8WV22 266 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms