RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 KDM4CQ9H3R0 1056 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 NLE1Q9NVX2 485 aaPredicted RBP16.57■□□□□ 0.24
VPS4A-202ENST00000562754 ZC3H7BQ9UGR2 993 aaKnown RBP16.57■□□□□ 0.24
VPS4A-202ENST00000562754 MBD1Q9UIS9 605 aaPredicted RBP16.57■□□□□ 0.24
VPS4A-202ENST00000562754 INVSQ9Y283 1065 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.57■□□□□ 0.24
VPS4A-202ENST00000562754 RPS6KL1Q9Y6S9 549 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 ZNF318Q5VUA4 2279 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 CCDC163A0A0D9SF12 145 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 ZCWPW2A0A1B0GU75 182 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 A0A1W2PQU0 124 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 MAGEB16A2A368 324 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 IGLON5A6NGN9 336 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 FAM47DPA6NHR8 397 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 GAPDHSO14556 408 aaPredicted RBP16.56■□□□□ 0.24
VPS4A-202ENST00000562754 USP1O94782 785 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 BPIP17213 487 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 ARNTP27540 789 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 OXTRP30559 389 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 ETV3P41162 512 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 SPINT3P49223 89 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 GPX6P59796 221 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 LAMB3Q13751 1172 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 ACOX1Q15067 660 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 KIAA1161Q6NSJ0 714 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 Q6ZVL8 140 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 WDR5BQ86VZ2 330 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 HORMAD1Q86X24 394 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 GPR26Q8NDV2 337 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 PYROXD1Q8WU10 500 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 PEX13Q92968 403 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 DTD2Q96FN9 168 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 NAT9Q9BTE0 207 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 C6orf106Q9H6K1 298 aaPredicted RBP16.56■□□□□ 0.24
VPS4A-202ENST00000562754 PKD2L2Q9NZM6 624 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 FKBPLQ9UIM3 349 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 A0A0C4DFX4 3053 aa16.56■□□□□ 0.24
VPS4A-202ENST00000562754 PLXNB3Q9ULL4 1909 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 TBC1D3DA0A087WVF3 549 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 TBC1D3IA0A087WXS9 549 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 TBC1D3EA0A087X179 549 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 TBC1D3KA0A087X1G2 549 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 UQCRHLA0A096LP55 91 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 TBC1D3FA6NER0 549 aaPredicted RBP16.55■□□□□ 0.24
VPS4A-202ENST00000562754 LRRC72A6NJI9 287 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 TBC1D3LB9A6J9 549 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 GPR37L1O60883 481 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 RPP40O75818 363 aaKnown RBP16.55■□□□□ 0.24
VPS4A-202ENST00000562754 RECQL5O94762 991 aaPredicted RBP16.55■□□□□ 0.24
VPS4A-202ENST00000562754 UQCRHP07919 91 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 TBC1D3HP0C7X1 549 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 BCKDHBP21953 392 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 SSTR1P30872 391 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 PDE1BQ01064 536 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 CREB5Q02930 508 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 SLMAPQ14BN4 828 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 SMAD1Q15797 465 aaKnown RBP16.55■□□□□ 0.24
VPS4A-202ENST00000562754 KYNUQ16719 465 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 ZNF284Q2VY69 593 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 SPANXN3Q5MJ09 141 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 TBC1D3GQ6DHY5 549 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 KIAA0930Q6ICG6 404 aaPredicted RBP16.55■□□□□ 0.24
VPS4A-202ENST00000562754 TBC1D3CQ6IPX1 549 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 NEK5Q6P3R8 708 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 EMBQ6PCB8 327 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 CAPN12Q6ZSI9 719 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 TRIM69Q86WT6 500 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 CCNJLQ8IV13 435 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 UNC5BQ8IZJ1 945 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 TBC1D3Q8IZP1 549 aaPredicted RBP16.55■□□□□ 0.24
VPS4A-202ENST00000562754 KLK6Q92876 244 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 CAVIN3Q969G5 261 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 TBATAQ96M53 351 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 GPR174Q9BXC1 333 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 C1QTNF2Q9BXJ5 285 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 EPB41L4BQ9H329 900 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 SEMA4AQ9H3S1 761 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 LRRC4CQ9HCJ2 640 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 IL1RAPL1Q9NZN1 696 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 NFKBIL1Q9UBC1 381 aaPredicted RBP16.55■□□□□ 0.24
VPS4A-202ENST00000562754 CD84Q9UIB8 345 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 FBXO4Q9UKT5 387 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 PKP3Q9Y446 797 aa16.55■□□□□ 0.24
VPS4A-202ENST00000562754 CCDC162PA2VCL2 907 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 OR51F1A6NGY5 319 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 WNT9AO14904 365 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 LZTS3O60299 673 aaPredicted RBP16.54■□□□□ 0.24
VPS4A-202ENST00000562754 TM7SF2O76062 418 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 TTC4O95801 387 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 POLBP06746 335 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 MAT2AP31153 395 aaKnown RBP16.54■□□□□ 0.24
VPS4A-202ENST00000562754 DCDC1P59894 354 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 RPS21P63220 83 aaKnown RBP16.54■□□□□ 0.24
VPS4A-202ENST00000562754 XIAPP98170 497 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 BRD3Q15059 726 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 SKIDA1Q1XH10 827 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 ALS2CLQ60I27 953 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 KIAA0895LQ68EN5 471 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 TRMT10BQ6PF06 316 aaKnown RBP16.54■□□□□ 0.24
VPS4A-202ENST00000562754 CYP2U1Q7Z449 544 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms