RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 BBS7Q8IWZ6 715 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 PARP9Q8IXQ6 854 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 C7orf61Q8IZ16 206 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 FSTL5Q8N475 847 aaPredicted RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 FITM2Q8N6M3 262 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 SHKBP1Q8TBC3 707 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 MAGEC3Q8TD91 643 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 ADAMTS19Q8TE59 1207 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 SLC22A17Q8WUG5 538 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 SKA1Q96BD8 255 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 ECHDC3Q96DC8 303 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 L3HYPDHQ96EM0 354 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 ASIC4Q96FT7 647 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 SCRN2Q96FV2 425 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 PDLIM5Q96HC4 596 aaKnown RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 PPP1R16AQ96I34 528 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 DNAJC1Q96KC8 554 aaKnown RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 OMDQ99983 421 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 BBS2Q9BXC9 721 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 TMEM120AQ9BXJ8 343 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 SLC46A2Q9BY10 475 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 ZCCHC2Q9C0B9 1178 aaKnown RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 CLPBQ9H078 707 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 ECT2Q9H8V3 914 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 UGT1A7Q9HAW7 530 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 UGT1A10Q9HAW8 530 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 UGT1A8Q9HAW9 530 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 TRPV4Q9HBA0 871 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 PIH1D1Q9NWS0 290 aaKnown RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 PKD2L2Q9NZM6 624 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 TMEM216Q9P0N5 145 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 XPR1Q9UBH6 696 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 DKK3Q9UBP4 350 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 RUVBL2Q9Y230 463 aaKnown RBP7.51□□□□□ -1.21
VPS39-204ENST00000561818 CHKBQ9Y259 395 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 ZNF711Q9Y462 761 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 PCDHB9Q9Y5E1 797 aa7.51□□□□□ -1.21
VPS39-204ENST00000561818 HELZP42694 1942 aaKnown RBP7.5□□□□□ -1.21
VPS39-204ENST00000561818 OBSL1O75147 1896 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 H0Y858 1186 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 HGSO14964 777 aaPredicted RBP7.5□□□□□ -1.21
VPS39-204ENST00000561818 CCL16O15467 120 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 TSPAN3O60637 253 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 CLASP2O75122 1294 aaKnown RBP7.5□□□□□ -1.21
VPS39-204ENST00000561818 RHOBTB1O94844 696 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 UBOX5O94941 541 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 PRNPP04156 253 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 ESRRAP11474 423 aaPredicted RBP7.5□□□□□ -1.21
VPS39-204ENST00000561818 PKMP14618 531 aaKnown RBP7.5□□□□□ -1.21
VPS39-204ENST00000561818 VCLP18206 1134 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 XPAP23025 273 aaPredicted RBP7.5□□□□□ -1.21
VPS39-204ENST00000561818 NSG1P42857 185 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 AQP5P55064 265 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 TAS2R39P59534 338 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 HERVK_113P63132 956 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 MPP1Q00013 466 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 PFKPQ01813 784 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 PLOD1Q02809 727 aaPredicted RBP7.5□□□□□ -1.21
VPS39-204ENST00000561818 ELP6Q0PNE2 266 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 LMAN2Q12907 356 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 CTBP1Q13363 440 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 GPM6BQ13491 265 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 ARHGEF7Q14155 803 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 GALNT3Q14435 633 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 DUSP6Q16828 381 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 KCTD19Q17RG1 926 aaPredicted RBP7.5□□□□□ -1.21
VPS39-204ENST00000561818 MYLK3Q32MK0 819 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 CARD16Q5EG05 197 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 PRSS36Q5K4E3 855 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 ERAP2Q6P179 960 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 FOXR1Q6PIV2 292 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 C16orf59Q7L2K0 433 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 CMC1Q7Z7K0 106 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 TMPRSS6Q8IU80 811 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 SLC41A1Q8IVJ1 513 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 DENND6AQ8IWF6 608 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 CENPLQ8N0S6 344 aaPredicted RBP7.5□□□□□ -1.21
VPS39-204ENST00000561818 TCAIMQ8N3R3 496 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 NETO2Q8NC67 525 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 VN1R2Q8NFZ6 395 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 OR4K2Q8NGD2 314 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 GRIN3AQ8TCU5 1115 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 OSCP1Q8WVF1 389 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 AUTS2Q8WXX7 1259 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 SMG7Q92540 1137 aaKnown RBP7.5□□□□□ -1.21
VPS39-204ENST00000561818 LPGAT1Q92604 370 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 KIAA1191Q96A73 305 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 MCUR1Q96AQ8 359 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 ATXN7L3BQ96GX2 97 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 NSL1Q96IY1 281 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 TBATAQ96M53 351 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 ZNF778Q96MU6 729 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 MCCC1Q96RQ3 725 aaPredicted RBP7.5□□□□□ -1.21
VPS39-204ENST00000561818 C1QTNF1Q9BXJ1 281 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 ERVK-6Q9BXR3 956 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 NUSAP1Q9BXS6 441 aaKnown RBP7.5□□□□□ -1.21
VPS39-204ENST00000561818 FBRSQ9HAH7 460 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 ARHGEF3Q9NR81 526 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 ABCF3Q9NUQ8 709 aa7.5□□□□□ -1.21
VPS39-204ENST00000561818 SMOXQ9NWM0 555 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms