RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 TRIM33Q9UPN9 1127 aa17.81■□□□□ 0.44
SNX1-208ENST00000559844 H0Y626 953 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 TBL1XO60907 577 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 GJB3O75712 270 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 RPP40O75818 363 aaKnown RBP17.8■□□□□ 0.44
SNX1-208ENST00000559844 CRTAMO95727 393 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 PTPN4P29074 926 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 TAS2R39P59534 338 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 RIPK1Q13546 671 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 GALNT3Q14435 633 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 TBCCQ15814 346 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 LY6G5CQ5SRR4 150 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 LIPMQ5VYY2 423 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 CNSTQ6PJW8 725 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 TMEM25Q86YD3 366 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 CEP97Q8IW35 865 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 SORT1Q99523 831 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 OMDQ99983 421 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 HPS4Q9NQG7 708 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 SPHK2Q9NRA0 654 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 CORO1CQ9ULV4 474 aaPredicted RBP17.8■□□□□ 0.44
SNX1-208ENST00000559844 SORCS3Q9UPU3 1222 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 COL4A3Q01955 1670 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 NFATC1O95644 943 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 HSPA4LO95757 839 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 CYP17A1P05093 508 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 ALOX15P16050 662 aaPredicted RBP17.8■□□□□ 0.44
SNX1-208ENST00000559844 CALB2P22676 271 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 GLDCP23378 1020 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 SCNN1BP51168 640 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 DHCR24Q15392 516 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 MRNIPQ6NTE8 343 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 CENPLQ8N0S6 344 aaPredicted RBP17.8■□□□□ 0.44
SNX1-208ENST00000559844 FSTL5Q8N475 847 aaPredicted RBP17.8■□□□□ 0.44
SNX1-208ENST00000559844 CARNMT1Q8N4J0 409 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 GPR150Q8NGU9 434 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 TTC8Q8TAM2 541 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 DDI1Q8WTU0 396 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 SCG3Q8WXD2 468 aaKnown RBP17.8■□□□□ 0.44
SNX1-208ENST00000559844 IRF7Q92985 503 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 TMA16Q96EY4 203 aaKnown RBP17.8■□□□□ 0.44
SNX1-208ENST00000559844 RILPQ96NA2 401 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 PLK2Q9NYY3 685 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 GTSE1Q9NYZ3 720 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 ACTL7AQ9Y615 435 aa17.8■□□□□ 0.44
SNX1-208ENST00000559844 GFRA2O00451 464 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 LUC7L3O95232 432 aaKnown RBP17.79■□□□□ 0.44
SNX1-208ENST00000559844 CYBBP04839 570 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 KRT16P08779 473 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 SNCBQ16143 134 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 HSF5Q4G112 596 aaPredicted RBP17.79■□□□□ 0.44
SNX1-208ENST00000559844 ALYREFQ86V81 257 aaKnown RBP17.79■□□□□ 0.44
SNX1-208ENST00000559844 SLC7A6OSQ96CW6 309 aaPredicted RBP17.79■□□□□ 0.44
SNX1-208ENST00000559844 BBS2Q9BXC9 721 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 TDRD1Q9BXT4 1180 aaKnown RBP17.79■□□□□ 0.44
SNX1-208ENST00000559844 CPSF2Q9P2I0 782 aaKnown RBP17.79■□□□□ 0.44
SNX1-208ENST00000559844 OTOL1A6NHN0 477 aaPredicted RBP17.79■□□□□ 0.44
SNX1-208ENST00000559844 C19orf67A6NJJ6 358 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 NEDD8-MDP1E9PL57 170 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 ARNTLO00327 626 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 S1PR4O95977 384 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 ADH1CP00326 375 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 SERPINA6P08185 405 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 OGNP20774 298 aaKnown RBP17.79■□□□□ 0.44
SNX1-208ENST00000559844 RGRP47804 291 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 NUMBP49757 651 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 ARSDP51689 593 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 HK2P52789 917 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 TDGQ13569 410 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 RUNX3Q13761 415 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 FAM83EQ2M2I3 478 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 MPPE1Q53F39 396 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 INO80DQ53TQ3 878 aaPredicted RBP17.79■□□□□ 0.44
SNX1-208ENST00000559844 HECTD2Q5U5R9 776 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 FAM45BPQ6NSW5 357 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 TMEM151AQ8N4L1 468 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 CPA6Q8N4T0 437 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 FAM45AQ8TCE6 357 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 NXNL1Q96CM4 212 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 PTCD3Q96EY7 689 aaKnown RBP17.79■□□□□ 0.44
SNX1-208ENST00000559844 MRPL57Q9BQC6 102 aaKnown RBP17.79■□□□□ 0.44
SNX1-208ENST00000559844 NMUR2Q9GZQ4 415 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 MRPL46Q9H2W6 279 aaKnown RBP17.79■□□□□ 0.44
SNX1-208ENST00000559844 ARL8BQ9NVJ2 186 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 APOBEC2Q9Y235 224 aaKnown RBP17.79■□□□□ 0.44
SNX1-208ENST00000559844 ARL5AQ9Y689 179 aa17.79■□□□□ 0.44
SNX1-208ENST00000559844 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.78■□□□□ 0.44
SNX1-208ENST00000559844 TARM1B6A8C7 271 aa17.78■□□□□ 0.44
SNX1-208ENST00000559844 TK2O00142 265 aa17.78■□□□□ 0.44
SNX1-208ENST00000559844 COL4A2P08572 1712 aa17.78■□□□□ 0.44
SNX1-208ENST00000559844 ARF5P84085 180 aa17.78■□□□□ 0.44
SNX1-208ENST00000559844 TAF1AQ15573 450 aaPredicted RBP17.78■□□□□ 0.44
SNX1-208ENST00000559844 RALGPS1Q5JS13 557 aa17.78■□□□□ 0.44
SNX1-208ENST00000559844 RBM20Q5T481 1227 aaKnown RBP17.78■□□□□ 0.44
SNX1-208ENST00000559844 AGAP9Q5VTM2 703 aa17.78■□□□□ 0.44
SNX1-208ENST00000559844 KLC3Q6P597 504 aa17.78■□□□□ 0.44
SNX1-208ENST00000559844 RMDN1Q96DB5 314 aa17.78■□□□□ 0.44
SNX1-208ENST00000559844 DNAJC1Q96KC8 554 aaKnown RBP17.78■□□□□ 0.44
SNX1-208ENST00000559844 TBATAQ96M53 351 aa17.78■□□□□ 0.44
SNX1-208ENST00000559844 GPR78Q96P69 363 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms