RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 FAM83CQ9BQN1 747 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 TRIM55Q9BYV6 548 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 NSUN3Q9H649 340 aaKnown RBP12.67□□□□□ -0.38
USP3-213ENST00000559711 ZFYVE1Q9HBF4 777 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 IGSF5Q9NSI5 407 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 VPS9D1Q9Y2B5 631 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 CRYL1Q9Y2S2 319 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 USH1CQ9Y6N9 552 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 GBF1Q92538 1859 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 A0A0U1RQS6 177 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 A0A1W2PQ67 120 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 CAPN8A6NHC0 703 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 CCDC85CA6NKD9 419 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 ASLP04424 464 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 SRPRAP08240 638 aaKnown RBP12.67□□□□□ -0.38
USP3-213ENST00000559711 PRSS56P0CW18 603 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 RALBP11234 206 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 ARSAP15289 507 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 FCARP24071 287 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 OVGP1Q12889 678 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 FAM83EQ2M2I3 478 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 GAB4Q2WGN9 574 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 LACTB2Q53H82 288 aaPredicted RBP12.67□□□□□ -0.38
USP3-213ENST00000559711 TCEAL5Q5H9L2 206 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 RNF187Q5TA31 235 aaPredicted RBP12.67□□□□□ -0.38
USP3-213ENST00000559711 LRRC8EQ6NSJ5 796 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 ZYG11AQ6WRX3 759 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 ZCCHC23Q6ZST2 131 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 Q6ZVU0 165 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 GET4Q7L5D6 327 aaPredicted RBP12.67□□□□□ -0.38
USP3-213ENST00000559711 TBC1D1Q86TI0 1168 aaPredicted RBP12.67□□□□□ -0.38
USP3-213ENST00000559711 PIANPQ8IYJ0 282 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 FSTL5Q8N475 847 aaPredicted RBP12.67□□□□□ -0.38
USP3-213ENST00000559711 HEXDCQ8WVB3 486 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 SCRN2Q96FV2 425 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 MCCC1Q96RQ3 725 aaPredicted RBP12.67□□□□□ -0.38
USP3-213ENST00000559711 AARSD1Q9BTE6 412 aaKnown RBP12.67□□□□□ -0.38
USP3-213ENST00000559711 APOL5Q9BWW9 433 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 C20orf27Q9GZN8 174 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 POPDC3Q9HBV1 291 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 GPAMQ9HCL2 828 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 BPIFA1Q9NP55 256 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 NPHS2Q9NP85 383 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 OXSMQ9NWU1 459 aa12.67□□□□□ -0.38
USP3-213ENST00000559711 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 PFDN6O15212 129 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 LINC01565O15544 149 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 TRIM13O60858 407 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 DNAJC6O75061 913 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 TULP3O75386 442 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 NDUFS3O75489 264 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 SLC4A1P02730 911 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 ATP5BP06576 529 aaKnown RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 DLDP09622 509 aaKnown RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 LTA4HP09960 611 aaKnown RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 MYL2P10916 166 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 BMP1P13497 986 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 BMP8BP34820 402 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 NNMTP40261 264 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 TTPAP49638 278 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 CDKN1CP49918 316 aaPredicted RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 KPNA2P52292 529 aaKnown RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 PRKAA2P54646 552 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 CACNG1Q06432 222 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 PDGFRLQ15198 375 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 AARS2Q5JTZ9 985 aaKnown RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 AGAP9Q5VTM2 703 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 PSAPL1Q6NUJ1 521 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 TPRG1Q6ZUI0 275 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 C12orf40Q86WS4 652 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 CBARPQ8N350 705 aaPredicted RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 RFWD2Q8NHY2 731 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 PPP1R14CQ8TAE6 165 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 TIFAQ96CG3 184 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 THOC1Q96FV9 657 aaKnown RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 RMDN2Q96LZ7 410 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 MRPL57Q9BQC6 102 aaKnown RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 MRPL46Q9H2W6 279 aaKnown RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 ZNF395Q9H8N7 513 aaPredicted RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 KCNK13Q9HB14 408 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 THG1LQ9NWX6 298 aaKnown RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 CPSF2Q9P2I0 782 aaKnown RBP12.66□□□□□ -0.38
USP3-213ENST00000559711 CDH22Q9UJ99 828 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 CDH7Q9ULB5 785 aa12.66□□□□□ -0.38
USP3-213ENST00000559711 C1orf232A0A0U1RR37 186 aa12.65□□□□□ -0.38
USP3-213ENST00000559711 TK2O00142 265 aa12.65□□□□□ -0.38
USP3-213ENST00000559711 H2AFYO75367 372 aaKnown RBP12.65□□□□□ -0.38
USP3-213ENST00000559711 CLDN7O95471 211 aa12.65□□□□□ -0.38
USP3-213ENST00000559711 CD9P21926 228 aa12.65□□□□□ -0.38
USP3-213ENST00000559711 RECQLP46063 649 aaPredicted RBP12.65□□□□□ -0.38
USP3-213ENST00000559711 SLC1A6P48664 564 aa12.65□□□□□ -0.38
USP3-213ENST00000559711 PTPN5P54829 565 aa12.65□□□□□ -0.38
USP3-213ENST00000559711 ADARP55265 1226 aaKnown RBP12.65□□□□□ -0.38
USP3-213ENST00000559711 CCDC15Q0P6D6 951 aa12.65□□□□□ -0.38
USP3-213ENST00000559711 ITGA9Q13797 1035 aa12.65□□□□□ -0.38
USP3-213ENST00000559711 ACAP2Q15057 778 aa12.65□□□□□ -0.38
USP3-213ENST00000559711 PTPRNQ16849 979 aa12.65□□□□□ -0.38
USP3-213ENST00000559711 TANGO2Q6ICL3 276 aa12.65□□□□□ -0.38
USP3-213ENST00000559711 CRTC1Q6UUV9 634 aa12.65□□□□□ -0.38
USP3-213ENST00000559711 TMEM207Q6UWW9 146 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms