RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 LIPCP11150 499 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 PSMA2P25787 234 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 CNTN1Q12860 1018 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 ELAVL3Q14576 367 aaKnown RBP12.6□□□□□ -0.39
SHMT2-230ENST00000557427 CCNG2Q16589 344 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 ARTNQ5T4W7 220 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 ACBD5Q5T8D3 534 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-230ENST00000557427 GCNT7Q6ZNI0 430 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 STRADAQ7RTN6 431 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 SETD3Q86TU7 594 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-230ENST00000557427 CCDC50Q8IVM0 306 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 PYROXD2Q8N2H3 581 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 IFT43Q96FT9 208 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 FMO2Q99518 471 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 HERPUD2Q9BSE4 406 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 C2orf49Q9BVC5 232 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-230ENST00000557427 TXLNGYQ9BZA5 131 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 DNAJC28Q9NX36 388 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 GRHL1Q9NZI5 618 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 VPS51Q9UID3 782 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 CSMD1Q96PZ7 3565 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 ILVBLA1L0T0 632 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 NTN3O00634 580 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-230ENST00000557427 MUSKO15146 869 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 SMAD6O43541 496 aaKnown RBP12.59□□□□□ -0.39
SHMT2-230ENST00000557427 ATP9BO43861 1147 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 KRT1P04264 644 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 KRT7P08729 469 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 SRCP12931 536 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 HSD17B3P37058 310 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 SSR1P43307 286 aaKnown RBP12.59□□□□□ -0.39
SHMT2-230ENST00000557427 RPL21P46778 160 aaKnown RBP12.59□□□□□ -0.39
SHMT2-230ENST00000557427 ZNF143P52747 638 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-230ENST00000557427 PTK6Q13882 451 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 FZD2Q14332 565 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 HADHQ16836 314 aaKnown RBP12.59□□□□□ -0.39
SHMT2-230ENST00000557427 ZNF284Q2VY69 593 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 DEFB133Q30KQ1 61 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 MANEAQ5SRI9 462 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 DRICH1Q6PGQ1 229 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-230ENST00000557427 ZDHHC24Q6UX98 284 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 Q6ZVU0 165 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 TMC3Q7Z5M5 1100 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 ABI3BPQ7Z7G0 1075 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 ZFAND4Q86XD8 727 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 FBXO39Q8N4B4 442 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 SH2D3CQ8N5H7 860 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 C1orf54Q8WWF1 131 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 OR8D1Q8WZ84 308 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 TRIM31Q9BZY9 425 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 ADNPQ9H2P0 1102 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 ATP13A1Q9HD20 1204 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 GPR27Q9NS67 375 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 NDFIP2Q9NV92 336 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 EVA1BQ9NVM1 165 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 WHRNQ9P202 907 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 PPARGC1AQ9UBK2 798 aaKnown RBP12.59□□□□□ -0.39
SHMT2-230ENST00000557427 MTRF1LQ9UGC7 380 aaKnown RBP12.59□□□□□ -0.39
SHMT2-230ENST00000557427 ADAM21Q9UKJ8 722 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 EFR3BQ9Y2G0 817 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 SNX24Q9Y343 169 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 SCN8AQ9UQD0 1980 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 LRRK1Q38SD2 2015 aa12.59□□□□□ -0.39
SHMT2-230ENST00000557427 C2CD3Q4AC94 2353 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 CENPEQ02224 2701 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 A0A1W2PQU0 124 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 NVLO15381 856 aaKnown RBP12.58□□□□□ -0.4
SHMT2-230ENST00000557427 CREB3O43889 395 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 LRIG2O94898 1065 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 TJP3O95049 919 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 GAS8O95995 478 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 CSF2P04141 144 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 ACVRL1P37023 503 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 HNRNPKP61978 463 aaKnown RBP eCLIP12.58□□□□□ -0.4
SHMT2-230ENST00000557427 SLC25A11Q02978 314 aaKnown RBP12.58□□□□□ -0.4
SHMT2-230ENST00000557427 GNA12Q03113 381 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 KCNAB2Q13303 367 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 PPP1R7Q15435 360 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 UAP1Q16222 522 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-230ENST00000557427 LEKR1Q6ZMV7 388 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 SPOCD1Q6ZMY3 1216 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 Q6ZSR6 202 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 RAB11FIP2Q7L804 512 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 DTX1Q86Y01 620 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 ATL2Q8NHH9 583 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 ART4Q93070 314 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 MIB2Q96AX9 1013 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 BMFQ96LC9 184 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 CNPY3Q9BT09 278 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 SLC12A9Q9BXP2 914 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 TNKS2Q9H2K2 1166 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 ZNF212Q9UDV6 495 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 ANAPC2Q9UJX6 822 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 PPM1HQ9ULR3 514 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 ACTL7AQ9Y615 435 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 CSNK1G3Q9Y6M4 447 aa12.58□□□□□ -0.4
SHMT2-230ENST00000557427 CELSR2Q9HCU4 2923 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 hCG_1818297A0A087WSY0 165 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 MCF2LO15068 1137 aa12.57□□□□□ -0.4
SHMT2-230ENST00000557427 LRCH4O75427 683 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms