RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 SH3RF2Q8TEC5 729 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 ISG20Q96AZ6 181 aaKnown RBP12.66□□□□□ -0.38
SHMT2-229ENST00000557348 MRPL57Q9BQC6 102 aaKnown RBP12.66□□□□□ -0.38
SHMT2-229ENST00000557348 MECRQ9BV79 373 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 CADM1Q9BY67 442 aaKnown RBP12.66□□□□□ -0.38
SHMT2-229ENST00000557348 A0A1W2PQ67 120 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 GOLGA8CPA6NN73 597 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 H7C0S8 307 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 CD3EAPO15446 510 aaKnown RBP12.65□□□□□ -0.38
SHMT2-229ENST00000557348 SNAP91O60641 907 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 CIB2O75838 187 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 IGSF6O95976 241 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 GSRP00390 522 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 RHOP08100 348 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 RBP1P09455 135 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 FGF3P11487 239 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-229ENST00000557348 PMLP29590 882 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 GSTT1P30711 240 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 SERPINB5P36952 375 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 PPARGP37231 505 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-229ENST00000557348 RGRP47804 291 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 SLC1A6P48664 564 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 POLE2P56282 527 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 IHHQ14623 411 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 TYSND1Q2T9J0 566 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 PLEKHG6Q3KR16 790 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 TMEM259Q4ZIN3 620 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 FSCBQ5H9T9 825 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 ARMC12Q5T9G4 340 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 C16orf46Q6P387 395 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 ACAD11Q709F0 780 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 PTAR1Q7Z6K3 402 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-229ENST00000557348 OR4L1Q8NH43 312 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 PIWIL2Q8TC59 973 aaKnown RBP12.65□□□□□ -0.38
SHMT2-229ENST00000557348 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.65□□□□□ -0.38
SHMT2-229ENST00000557348 DNAJC1Q96KC8 554 aaKnown RBP12.65□□□□□ -0.38
SHMT2-229ENST00000557348 TUBGCP5Q96RT8 1024 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 SLC2A11Q9BYW1 496 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 MRPL46Q9H2W6 279 aaKnown RBP12.65□□□□□ -0.38
SHMT2-229ENST00000557348 CAB39LQ9H9S4 337 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 MAGEE1Q9HCI5 957 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 TDP1Q9NUW8 608 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 COMMD10Q9Y6G5 202 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 OBSL1O75147 1896 aa12.65□□□□□ -0.38
SHMT2-229ENST00000557348 MIA3Q5JRA6 1907 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 A0A0G2JND7 137 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 LCHNA4D1U4 455 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 GRM6O15303 877 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 ENTPD5O75356 428 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 CD160O95971 181 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 S1PR4O95977 384 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 GOT2P00505 430 aaKnown RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 LYNP07948 512 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 LTA4HP09960 611 aaKnown RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 WEE1P30291 646 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 EPHB1P54762 984 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 ABCE1P61221 599 aaKnown RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 SNRPD1P62314 119 aaKnown RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 ZXDBP98169 803 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 ZBTB16Q05516 673 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 SFSWAPQ12872 951 aaKnown RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 SMAD1Q15797 465 aaKnown RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 LIN52Q52LA3 116 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 LIPMQ5VYY2 423 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 LRRC8EQ6NSJ5 796 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 SLC41A1Q8IVJ1 513 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 C10orf107Q8IVU9 208 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 LPCAT1Q8NF37 534 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 SLC22A17Q8WUG5 538 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 STON2Q8WXE9 905 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 SKA1Q96BD8 255 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 SCYL1Q96KG9 808 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 OMDQ99983 421 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 C1QTNF1Q9BXJ1 281 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 TMEM120AQ9BXJ8 343 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 CEP44Q9C0F1 390 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 LMAN2LQ9H0V9 348 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 CCDC68Q9H2F9 335 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 ATP13A3Q9H7F0 1226 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 FBXO6Q9NRD1 293 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 OXSMQ9NWU1 459 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 VWA7Q9Y334 891 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 PKP3Q9Y446 797 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 ARL5AQ9Y689 179 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 CCDC195A0A1B0GUA6 201 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 TTC24A2A3L6 582 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 PHGDHO43175 533 aaKnown RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 FZD6O60353 706 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 CLASP2O75122 1294 aaKnown RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 PRLP01236 227 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 PRKCGP05129 697 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 ESRRAP11474 423 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 CD9P21926 228 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 SERPINA4P29622 427 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 TTPAP49638 278 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 STC1P52823 247 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 RAD51Q06609 339 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 BCL2L1Q07817 233 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 OVGP1Q12889 678 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 LMAN2Q12907 356 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms