RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PAFAH1B1P43034 410 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 MAPK9P45984 424 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 GNAQP50148 359 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 FUT6P51993 359 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 BRWD1-AS2P59051 145 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 TLE2Q04725 743 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 RELQ04864 619 aaPredicted RBP3.76□□□□□ -1.81
SCFD1-216ENST00000555550 GALNT2Q10471 571 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 TXNDC8Q6A555 127 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 METTL2BQ6P1Q9 378 aaKnown RBP3.76□□□□□ -1.81
SCFD1-216ENST00000555550 CYP26C1Q6V0L0 522 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 ZNF354CQ86Y25 554 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 ZNF485Q8NCK3 441 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 SPATA22Q8NHS9 363 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 LNX1Q8TBB1 728 aaPredicted RBP3.76□□□□□ -1.81
SCFD1-216ENST00000555550 PPM1EQ8WY54 764 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 KLHL29Q96CT2 875 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 HVCN1Q96D96 273 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 ZBTB10Q96DT7 871 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 CDCA5Q96FF9 252 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 METTL2AQ96IZ6 378 aaKnown RBP3.76□□□□□ -1.81
SCFD1-216ENST00000555550 FUZQ9BT04 418 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 KRTAP4-3Q9BYR4 195 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 MMP28Q9H239 520 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 ESRP2Q9H6T0 727 aaKnown RBP3.76□□□□□ -1.81
SCFD1-216ENST00000555550 PPP1R3EQ9H7J1 279 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 ABCF3Q9NUQ8 709 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 MCM9Q9NXL9 1143 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 SLC25A10Q9UBX3 287 aaPredicted RBP3.76□□□□□ -1.81
SCFD1-216ENST00000555550 A4GNTQ9UNA3 340 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 ERVK-11Q9UQG0 969 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 AMDHD2Q9Y303 409 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 PDS5AQ29RF7 1337 aaKnown RBP3.75□□□□□ -1.81
SCFD1-216ENST00000555550 FAM172BPA6NC97 362 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 RRN3P2A6NIE6 340 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 SEC14L5O43304 696 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 DDX5P17844 614 aaKnown RBP3.75□□□□□ -1.81
SCFD1-216ENST00000555550 DDIT3P35638 169 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 GABRB2P47870 512 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 FMO5P49326 533 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 METAP2P50579 478 aaKnown RBP eCLIP3.75□□□□□ -1.81
SCFD1-216ENST00000555550 RAD23BP54727 409 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 NAE1Q13564 534 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 C2orf68Q2NKX9 166 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 KCNT1Q5JUK3 1230 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 GPATCH4Q5T3I0 446 aaKnown RBP3.75□□□□□ -1.81
SCFD1-216ENST00000555550 SLC26A9Q7LBE3 791 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 FOXRED2Q8IWF2 684 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 SPATA6LQ8N4H0 392 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 DMBX1Q8NFW5 382 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 BBS10Q8TAM1 723 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 CMKLR1Q99788 373 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 PCDH9Q9HC56 1237 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 PPP1R14DQ9NXH3 145 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 PADI1Q9ULC6 663 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 ZNF711Q9Y462 761 aa3.75□□□□□ -1.81
SCFD1-216ENST00000555550 A0A1B0GU03 582 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 LRRC53A6NM62 1247 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 SNAP23O00161 211 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 P2RY10O00398 339 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 MAOAP21397 527 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 BDKRB2P30411 391 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 USP8P40818 1118 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 CTCFP49711 727 aaPredicted RBP3.74□□□□□ -1.81
SCFD1-216ENST00000555550 VAMP2P63027 116 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 PDE1BQ01064 536 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 NEXNQ0ZGT2 675 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 SLC9B1Q4ZJI4 515 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 FAM69AQ5T7M9 428 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 GGNBP1Q5YKI7 109 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 KMT5CQ86Y97 462 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 CPXCR1Q8N123 301 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 METTL27Q8N6F8 245 aaPredicted RBP3.74□□□□□ -1.81
SCFD1-216ENST00000555550 DUSP19Q8WTR2 217 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 SLC20A1Q8WUM9 679 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 USP13Q92995 863 aaPredicted RBP3.74□□□□□ -1.81
SCFD1-216ENST00000555550 PABPC5Q96DU9 382 aaKnown RBP3.74□□□□□ -1.81
SCFD1-216ENST00000555550 MTERF1Q99551 399 aaKnown RBP3.74□□□□□ -1.81
SCFD1-216ENST00000555550 SH3GL2Q99962 352 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 TKTL2Q9H0I9 626 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 CSTL1Q9H114 145 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 HINT3Q9NQE9 182 aaKnown RBP3.74□□□□□ -1.81
SCFD1-216ENST00000555550 KCND2Q9NZV8 630 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 MPP6Q9NZW5 540 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 TAAR2Q9P1P5 351 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 RALYQ9UKM9 306 aaKnown RBP3.74□□□□□ -1.81
SCFD1-216ENST00000555550 AAR2Q9Y312 384 aaKnown RBP3.74□□□□□ -1.81
SCFD1-216ENST00000555550 LOXL2Q9Y4K0 774 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 SCINQ9Y6U3 715 aa3.74□□□□□ -1.81
SCFD1-216ENST00000555550 CCDC196A0A1B0GTZ2 297 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 ASPDHA6ND91 283 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 GOLGA6L9A6NEM1 432 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 USP17L23D6RBM5 183 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 DVL1O14640 695 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 CAPN9O14815 690 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 XBP1P17861 261 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 S1PR1P21453 382 aa3.73□□□□□ -1.81
SCFD1-216ENST00000555550 DVL1P1P54792 670 aaPredicted RBP3.73□□□□□ -1.81
SCFD1-216ENST00000555550 HNRNPH2P55795 449 aaKnown RBP3.73□□□□□ -1.81
SCFD1-216ENST00000555550 ERVK11-1P61568 191 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms