RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 CELA2BP08218 269 aaPredicted RBP16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 CDC25BP30305 580 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 EPHB1P54762 984 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 CDK3Q00526 305 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 PTSQ03393 145 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 C1orf61Q13536 156 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 CDKN3Q16667 212 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 GUSBP11Q6P575 273 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 OGFOD3Q6PK18 319 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 SPOCD1Q6ZMY3 1216 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 Q6ZVL8 140 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 HEATR4Q86WZ0 1026 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 GAS2L3Q86XJ1 694 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 MARCH9Q86YJ5 346 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 RFX6Q8HWS3 928 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 RCOR2Q8IZ40 523 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 EXD1Q8NHP7 514 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 MDM1Q8TC05 714 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 RNF25Q96BH1 459 aaPredicted RBP16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 RBM41Q96IZ5 413 aaKnown RBP16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 DEPDC7Q96QD5 511 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 TRIB3Q96RU7 358 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 LGR4Q9BXB1 951 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 ADGRE3Q9BY15 652 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 SLC25A51Q9H1U9 297 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 CHKBQ9Y259 395 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 SLC17A4Q9Y2C5 497 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 HYOU1Q9Y4L1 999 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 ITPR1Q14643 2758 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 hCG_1818297A0A087WSY0 165 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 SOWAHDA6NJG2 315 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 ANKRD66B4E2M5 251 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 ZRANB2O95218 330 aaKnown RBP eCLIP16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 IVLP07476 585 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 CTPS1P17812 591 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 CTNNA1P35221 906 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 COPS2P61201 443 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 AP1B1Q10567 949 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 KCTD16Q68DU8 428 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 EFL1Q7Z2Z2 1120 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 GPR156Q8NFN8 814 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 TRNAU1APQ9NX07 287 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 NFKBIL1Q9UBC1 381 aaPredicted RBP16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 PADI4Q9UM07 663 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 DOLKQ9UPQ8 538 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 EFR3BQ9Y2G0 817 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 TTLL3Q9Y4R7 772 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 MYLKQ15746 1914 aa16.01■□□□□ 0.15
CCDC88C-209ENST00000554872 RCCD1A6NED2 376 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 PJA2O43164 708 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 CST8O60676 142 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 DXOO77932 396 aaKnown RBP16■□□□□ 0.15
CCDC88C-209ENST00000554872 CEACAM5P06731 702 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 PTPN7P35236 360 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 CD86P42081 329 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 CLDN6P56747 220 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 CYP4F3Q08477 520 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 QPCTQ16769 361 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 TEX44Q53QW1 395 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 IGF2-ASQ6U949 168 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 NPNTQ6UXI9 565 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 NT5DC3Q86UY8 548 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 MAPK15Q8TD08 544 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 GPBAR1Q8TDU6 330 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 TFB1MQ8WVM0 346 aaKnown RBP16■□□□□ 0.15
CCDC88C-209ENST00000554872 AP2M1Q96CW1 435 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 COX14Q96I36 57 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 TEKT5Q96M29 485 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 VAT1Q99536 393 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 CDH19Q9H159 772 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 ABCG8Q9H221 673 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 IMPACTQ9P2X3 320 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 GPR34Q9UPC5 381 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 REXO2Q9Y3B8 237 aaKnown RBP16■□□□□ 0.15
CCDC88C-209ENST00000554872 LAMA5O15230 3695 aa16■□□□□ 0.15
CCDC88C-209ENST00000554872 ASXL3Q9C0F0 2248 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 CELSR3Q9NYQ7 3312 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 A0A087WV48 116 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 HACD1B0YJ81 288 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 NTN3O00634 580 aaPredicted RBP15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 MYF5P13349 255 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 PNLIPP16233 465 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 PTPN3P26045 913 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 DCDC1P59894 354 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 PEX6Q13608 980 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 PTPRRQ15256 657 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 RAET1GQ6H3X3 334 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 RAD9BQ6WBX8 426 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 NYAP1Q6ZVC0 841 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 BBS12Q6ZW61 710 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 DAAM2Q86T65 1068 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 C17orf82Q86X59 251 aaPredicted RBP15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 TMEM139Q8IV31 216 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 KYQ8NBH2 561 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 LPCAT1Q8NF37 534 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 SNIP1Q8TAD8 396 aaKnown RBP15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 LRRN4Q8WUT4 740 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 SRPK1Q96SB4 655 aaKnown RBP15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 MLPHQ9BV36 600 aaPredicted RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms