RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 SLC12A1Q13621 1099 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 CDH18Q13634 790 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 UGP2Q16851 508 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 CCDC153Q494R4 210 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 C5orf22Q49AR2 442 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 NECAB2Q7Z6G3 386 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 CILP2Q8IUL8 1156 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 RYBPQ8N488 228 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-212ENST00000554467 FIBCD1Q8N539 461 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 PIWIL2Q8TC59 973 aaKnown RBP11.7□□□□□ -0.54
SHMT2-212ENST00000554467 PTCD2Q8WV60 388 aaKnown RBP11.7□□□□□ -0.54
SHMT2-212ENST00000554467 ANKRD49Q8WVL7 239 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 TADA1Q96BN2 335 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 TSNARE1Q96NA8 513 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 PPP1R2P1Q96PQ5 205 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 MGME1Q9BQP7 344 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 CENPKQ9BS16 269 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 INIPQ9NRY2 104 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 CCL26Q9Y258 94 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 CHD5Q8TDI0 1954 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 SPTBN5Q9NRC6 3674 aaKnown RBP11.7□□□□□ -0.54
SHMT2-212ENST00000554467 PTPRSQ13332 1948 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 ILVBLA1L0T0 632 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 A8MX80 341 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 LRG1P02750 347 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 MPSTP25325 297 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 CRABP2P29373 138 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 RFC2P35250 354 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 EMP3P54852 163 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 CBX3Q13185 183 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 ZNF697Q5TEC3 545 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 LRRC8EQ6NSJ5 796 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 FBXO46Q6PJ61 603 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-212ENST00000554467 ST13P5Q8NFI4 369 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-212ENST00000554467 PPP4R1Q8TF05 950 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 EXT2Q93063 718 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 TCF25Q9BQ70 676 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 ZBP1Q9H171 429 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 MRM3Q9HC36 420 aaKnown RBP11.7□□□□□ -0.54
SHMT2-212ENST00000554467 NSMCE4AQ9NXX6 385 aa11.7□□□□□ -0.54
SHMT2-212ENST00000554467 GOLGA8QA0A0J9YX86 632 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 GOLGA8OA6NCC3 632 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 GOLGA8NF8WBI6 632 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 SMAD6O43541 496 aaKnown RBP11.69□□□□□ -0.54
SHMT2-212ENST00000554467 GREM1O60565 184 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 LILRB3O75022 631 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 CCR2P41597 374 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 CDC16Q13042 620 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 EFCAB3Q8N7B9 438 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 PPFIBP2Q8ND30 876 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 MDGA1Q8NFP4 955 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 OR4K2Q8NGD2 314 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 ZNF398Q8TD17 642 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 MYLIPQ8WY64 445 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 TCEAL4Q96EI5 215 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 RPL10LQ96L21 214 aaKnown RBP11.69□□□□□ -0.54
SHMT2-212ENST00000554467 FEM1AQ9BSK4 669 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 RMI1Q9H9A7 625 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 KCNK4Q9NYG8 393 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 FIS1Q9Y3D6 152 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 RAI2Q9Y5P3 530 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 ANKRD36A6QL64 1941 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 NEMP1O14524 444 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 PRLP01236 227 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 LINC00271P0C7V0 271 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 ANPEPP15144 967 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 CTPS1P17812 591 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 GRIA4P48058 902 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 EPHB1P54762 984 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 BBS5Q8N3I7 341 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 SNRNP27Q8WVK2 155 aaKnown RBP11.69□□□□□ -0.54
SHMT2-212ENST00000554467 FATE1Q969F0 183 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 FEM1CQ96JP0 617 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 TRIB3Q96RU7 358 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 GPAMQ9HCL2 828 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 UBA6A0AVT1 1052 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-212ENST00000554467 DLX3O60479 287 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 TRIM13O60858 407 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 PRAMEF12O95522 483 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 NDST3O95803 873 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 KCNA5P22460 613 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 DNAJB1P25685 340 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 TRAF2Q12933 501 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 HECTD2Q5U5R9 776 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 TMEM207Q6UWW9 146 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 RNF111Q6ZNA4 994 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 GLT6D1Q7Z4J2 308 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 HERC6Q8IVU3 1022 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 PAF1Q8N7H5 531 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 MAPK15Q8TD08 544 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 MRPS31Q92665 395 aaKnown RBP11.69□□□□□ -0.54
SHMT2-212ENST00000554467 GPR78Q96P69 363 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 VPS51Q9UID3 782 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 TSR3Q9UJK0 312 aaKnown RBP11.69□□□□□ -0.54
SHMT2-212ENST00000554467 LTBP2Q14767 1821 aa11.69□□□□□ -0.54
SHMT2-212ENST00000554467 KIAA1671Q9BY89 1806 aa11.68□□□□□ -0.54
SHMT2-212ENST00000554467 LOC100653049A0A140TA62 436 aa11.68□□□□□ -0.54
SHMT2-212ENST00000554467 TMEM233B4DJY2 109 aa11.68□□□□□ -0.54
SHMT2-212ENST00000554467 KIAA0355O15063 1070 aa11.68□□□□□ -0.54
SHMT2-212ENST00000554467 CD3EAPO15446 510 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms