RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 LRP8Q14114 963 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 TRIM25Q14258 630 aaKnown RBP12.91□□□□□ -0.34
SHMT2-205ENST00000553474 MGAT5BQ3V5L5 792 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 SFT2D3Q587I9 215 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 GPR158Q5T848 1215 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 LPCAT4Q643R3 524 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 RNF135Q8IUD6 432 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 MARVELD2Q8N4S9 558 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 PCYOX1LQ8NBM8 494 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 HIPK4Q8NE63 616 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 DUS3LQ96G46 650 aaKnown RBP12.91□□□□□ -0.34
SHMT2-205ENST00000553474 TBATAQ96M53 351 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 GBP5Q96PP8 586 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 TSC22D3Q99576 134 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 CENPKQ9BS16 269 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 CYP4F12Q9HCS2 524 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 NLE1Q9NVX2 485 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-205ENST00000553474 CACNA2D2Q9NY47 1150 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 DNMT3LQ9UJW3 386 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 PCDHB7Q9Y5E2 793 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 MICAL3Q7RTP6 2002 aa12.91□□□□□ -0.34
SHMT2-205ENST00000553474 PRSS51A0A1B0GVH4 220 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 CLDN11O75508 207 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 SKAP2O75563 359 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-205ENST00000553474 TBX18O95935 607 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 XRCC1P18887 633 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-205ENST00000553474 PMLP29590 882 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 ATP5C1P36542 298 aaKnown RBP12.9□□□□□ -0.34
SHMT2-205ENST00000553474 ERFP50548 548 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 AQP4P55087 323 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 PSME3P61289 254 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 GNA12Q03113 381 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 PDAP1Q13442 181 aaKnown RBP12.9□□□□□ -0.34
SHMT2-205ENST00000553474 IHHQ14623 411 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 GRAMD1BQ3KR37 738 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 RASIP1Q5U651 963 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 AFTPHQ6ULP2 937 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 STAG3L4Q8TBR4 150 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 BLOC1S5Q8TDH9 187 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 PHF21BQ96EK2 531 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 C19orf60Q96EN9 201 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 TRIB3Q96RU7 358 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 AARSD1Q9BTE6 412 aaKnown RBP12.9□□□□□ -0.34
SHMT2-205ENST00000553474 ALG9Q9H6U8 611 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 PFDN4Q9NQP4 134 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 TAS2R13Q9NYV9 303 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 NDUFA13Q9P0J0 144 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 MARCH4Q9P2E8 410 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-205ENST00000553474 RIMS3Q9UJD0 308 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 G3BP2Q9UN86 482 aaKnown RBP12.9□□□□□ -0.34
SHMT2-205ENST00000553474 PCDHGA7Q9Y5G6 932 aa12.9□□□□□ -0.34
SHMT2-205ENST00000553474 SYCE1LA8MT33 242 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 KIAA0355O15063 1070 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 CFLARO15519 480 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 ACSL4O60488 711 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 RNASEH1O60930 286 aaKnown RBP12.89□□□□□ -0.35
SHMT2-205ENST00000553474 NBNO60934 754 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 TIMP1P01033 207 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 C8BP07358 591 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 GRIK2Q13002 908 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 TAF1AQ15573 450 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-205ENST00000553474 UNC50Q53HI1 259 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 COQ5Q5HYK3 327 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 SAMD4BQ5PRF9 694 aaKnown RBP12.89□□□□□ -0.35
SHMT2-205ENST00000553474 NADSYN1Q6IA69 706 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 PRMT9Q6P2P2 845 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 FUT10Q6P4F1 479 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 TMEM207Q6UWW9 146 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 CHST9Q7L1S5 443 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 EFL1Q7Z2Z2 1120 aaKnown RBP12.89□□□□□ -0.35
SHMT2-205ENST00000553474 TICAM1Q8IUC6 712 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 EGFL6Q8IUX8 553 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 BHLHE22Q8NFJ8 381 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-205ENST00000553474 TSPEARQ8WU66 669 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 KIAA1191Q96A73 305 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 PLD4Q96BZ4 506 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 CDKN2AIPNLQ96HQ2 116 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 DNAJC1Q96KC8 554 aaKnown RBP12.89□□□□□ -0.35
SHMT2-205ENST00000553474 SEPT5Q99719 369 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-205ENST00000553474 GPR62Q9BZJ7 368 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 YIPF3Q9GZM5 350 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 DERL2Q9GZP9 239 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 TMEM45AQ9NWC5 275 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 HSFX1Q9UBD0 423 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 TBC1D30Q9Y2I9 924 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 COMMD10Q9Y6G5 202 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 ILVBLA1L0T0 632 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 CCDC162PA2VCL2 907 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 LCHNA4D1U4 455 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 C2orf81A6NN90 581 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 KDELR3O43731 214 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 NRP2O60462 931 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 KERAO60938 352 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 STAMBPO95630 424 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 PYGLP06737 847 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 UBTFL6P0CB48 400 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-205ENST00000553474 CSF2RAP15509 400 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 HOXD9P28356 352 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-205ENST00000553474 ACVRL1P37023 503 aa12.89□□□□□ -0.35
SHMT2-205ENST00000553474 MRPL19P49406 292 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms