RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 PILRAQ9UKJ1 303 aa9.07□□□□□ -0.96
SYNE2-209ENST00000553308 GOLGA6CA6NDK9 693 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 GOLGA6BA6NDN3 693 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 ARHGAP42A6NI28 874 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 PRR19A6NJB7 356 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 SIGLEC16A6NMB1 481 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 A8MU76 341 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 CAPN5O15484 640 aaPredicted RBP9.06□□□□□ -0.96
SYNE2-209ENST00000553308 MTSS1O43312 755 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 HEXIM1O94992 359 aaKnown RBP9.06□□□□□ -0.96
SYNE2-209ENST00000553308 CALB1P05937 261 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 GOLGA6DP0CG33 693 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 LHCGRP22888 699 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 SOX5P35711 763 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 ETV3P41162 512 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 ACTR1BP42025 376 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 SCNN1BP51168 640 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 ZNF143P52747 638 aaPredicted RBP9.06□□□□□ -0.96
SYNE2-209ENST00000553308 JAM2P57087 298 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 RAB15P59190 212 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 ACTR1AP61163 376 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 POLR2FP61218 127 aaKnown RBP9.06□□□□□ -0.96
SYNE2-209ENST00000553308 POLR2LP62875 67 aaKnown RBP9.06□□□□□ -0.96
SYNE2-209ENST00000553308 OGDHQ02218 1023 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 SQSTM1Q13501 440 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 PTPRRQ15256 657 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 CA9Q16790 459 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 CLEC16AQ2KHT3 1053 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 DEFB109BQ30KR1 87 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 DPCR1Q3MIW9 517 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 LACTB2Q53H82 288 aaPredicted RBP9.06□□□□□ -0.96
SYNE2-209ENST00000553308 SNAP47Q5SQN1 464 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 RAET1GQ6H3X3 334 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 DNAJC24Q6P3W2 148 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 TMEM71Q6P5X7 295 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 MON1BQ7L1V2 547 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 TIPARPQ7Z3E1 657 aaKnown RBP9.06□□□□□ -0.96
SYNE2-209ENST00000553308 HSD11B1LQ7Z5J1 315 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 PHF13Q86YI8 300 aaPredicted RBP9.06□□□□□ -0.96
SYNE2-209ENST00000553308 ARHGAP12Q8IWW6 846 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 NLGN4XQ8N0W4 816 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 NPWQ8N729 165 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 NLGN4YQ8NFZ3 816 aaPredicted RBP9.06□□□□□ -0.96
SYNE2-209ENST00000553308 FNIP1Q8TF40 1166 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 APOBEC4Q8WW27 367 aaKnown RBP9.06□□□□□ -0.96
SYNE2-209ENST00000553308 STARD8Q92502 1023 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 KIAA1143Q96AT1 154 aaPredicted RBP9.06□□□□□ -0.96
SYNE2-209ENST00000553308 MIB2Q96AX9 1013 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 DTD2Q96FN9 168 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 SPRY4Q9C004 299 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 VPS16Q9H269 839 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 SP110Q9HB58 689 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 APMAPQ9HDC9 416 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 NLRC4Q9NPP4 1024 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 SAMSN1Q9NSI8 373 aaKnown RBP9.06□□□□□ -0.96
SYNE2-209ENST00000553308 GOLGA6AQ9NYA3 693 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 TAB2Q9NYJ8 693 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 SLC17A4Q9Y2C5 497 aa9.06□□□□□ -0.96
SYNE2-209ENST00000553308 TRBV23OR9-2A0A075B6M9 112 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 A0A0U1RQS6 177 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 NPIPB15A6NHN6 443 aaPredicted RBP9.05□□□□□ -0.96
SYNE2-209ENST00000553308 K7EM74 188 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 DFFAO00273 331 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 EEF2KO00418 725 aaKnown RBP9.05□□□□□ -0.96
SYNE2-209ENST00000553308 CPP00450 1065 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 IVLP07476 585 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 TNFAIP3P21580 790 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 MAP4P27816 1152 aaKnown RBP9.05□□□□□ -0.96
SYNE2-209ENST00000553308 ERCC5P28715 1186 aaPredicted RBP9.05□□□□□ -0.96
SYNE2-209ENST00000553308 VIPR1P32241 457 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 HTR7P34969 479 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 PPM1FP49593 454 aaPredicted RBP9.05□□□□□ -0.96
SYNE2-209ENST00000553308 AIF1P55008 147 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 AP1S1P61966 158 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 GPLD1P80108 840 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 C4orf17Q53FE4 359 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 C16orf46Q6P387 395 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 Q6ZVL8 140 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 TSPAN33Q86UF1 283 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 TRIM74Q86UV6 250 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 TP53INP2Q8IXH6 220 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 SLC37A2Q8TED4 501 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 PDCD6IPQ8WUM4 868 aaKnown RBP9.05□□□□□ -0.96
SYNE2-209ENST00000553308 RNF31Q96EP0 1072 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 AHCYL2Q96HN2 611 aaKnown RBP9.05□□□□□ -0.96
SYNE2-209ENST00000553308 TEFMQ96QE5 360 aaKnown RBP9.05□□□□□ -0.96
SYNE2-209ENST00000553308 OR2M4Q96R27 311 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 DPYSL5Q9BPU6 564 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 CNPY3Q9BT09 278 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 DHX35Q9H5Z1 703 aaKnown RBP9.05□□□□□ -0.96
SYNE2-209ENST00000553308 FAM207AQ9NSI2 230 aaPredicted RBP9.05□□□□□ -0.96
SYNE2-209ENST00000553308 SEPT11Q9NVA2 429 aaKnown RBP9.05□□□□□ -0.96
SYNE2-209ENST00000553308 PDP2Q9P2J9 529 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 AP4E1Q9UPM8 1137 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 TP53TG5Q9Y2B4 290 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 TMEM98Q9Y2Y6 226 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 PCDHGC4Q9Y5F7 938 aa9.05□□□□□ -0.96
SYNE2-209ENST00000553308 MRPS18BQ9Y676 258 aaKnown RBP9.05□□□□□ -0.96
SYNE2-209ENST00000553308 FLNCQ14315 2725 aa9.04□□□□□ -0.96
SYNE2-209ENST00000553308 ANKRD62A6NC57 917 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms