RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CNOT3O75175 753 aaKnown RBP4.86□□□□□ -1.63
LIMA1-214ENST00000552783 INMTO95050 263 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 SIX3O95343 332 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-214ENST00000552783 CPNE6O95741 557 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 MOCS2O96007 188 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-214ENST00000552783 SLC4A1P02730 911 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 LGALS2P05162 132 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 ERCC2P18074 760 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 PIGAP37287 484 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 CAPGP40121 348 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 NR4A2P43354 598 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 RPS9P46781 194 aaKnown RBP4.86□□□□□ -1.63
LIMA1-214ENST00000552783 DIO3P55073 304 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 RAB10P61026 200 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 IFITM2Q01629 132 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 SEPT6Q14141 434 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 SQLEQ14534 574 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 CTU2Q2VPK5 515 aaKnown RBP4.86□□□□□ -1.63
LIMA1-214ENST00000552783 R3HCC1LQ7Z5L2 792 aaKnown RBP4.86□□□□□ -1.63
LIMA1-214ENST00000552783 PIM3Q86V86 326 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 LGI2Q8N0V4 545 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 DHRSXQ8N5I4 330 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 FAM86B1Q8N7N1 296 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 NLGN2Q8NFZ4 835 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 TNIP2Q8NFZ5 429 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 NDNFQ8TB73 568 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 SLC2A14Q8TDB8 520 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 SREK1Q8WXA9 508 aaKnown RBP4.86□□□□□ -1.63
LIMA1-214ENST00000552783 TOP1MTQ969P6 601 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 CENPNQ96H22 339 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-214ENST00000552783 ELMO2Q96JJ3 720 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 NSUN5Q96P11 429 aaKnown RBP4.86□□□□□ -1.63
LIMA1-214ENST00000552783 MROQ9BYG7 248 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 GBA3Q9H227 469 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 TUBB1Q9H4B7 451 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 ATP13A3Q9H7F0 1226 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 CDHR5Q9HBB8 845 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 PAK1IP1Q9NWT1 392 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-214ENST00000552783 GID8Q9NWU2 228 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 GIN1Q9NXP7 522 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 SLCO3A1Q9UIG8 710 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 RAD54BQ9Y620 910 aa4.86□□□□□ -1.63
LIMA1-214ENST00000552783 A0A1W2PQ67 120 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 TCRBV5S2A0A599 114 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 TTC24A2A3L6 582 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-214ENST00000552783 UPK1AO00322 258 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 H2AFYO75367 372 aaKnown RBP4.85□□□□□ -1.63
LIMA1-214ENST00000552783 GPC4O75487 556 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 USP2O75604 605 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-214ENST00000552783 MYO1DO94832 1006 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 JCHAINP01591 159 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 MBL2P11226 248 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-214ENST00000552783 GFAPP14136 432 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 MAGP20916 626 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 FASP25445 335 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 HLCSP50747 726 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 ZNF280AP59817 542 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-214ENST00000552783 SH3BP2P78314 561 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 CCNA1P78396 465 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 ADIGQ0VDE8 80 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 GRSF1Q12849 480 aaKnown RBP eCLIP4.85□□□□□ -1.63
LIMA1-214ENST00000552783 SLC13A2Q13183 592 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 CTF1Q16619 201 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 MEP1AQ16819 746 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 FAM83EQ2M2I3 478 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 PAGE3Q5JUK9 113 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 PRAMEF19Q5SWL8 479 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 CATSPEREQ5SY80 951 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 DEPDC1Q5TB30 811 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 TMEM236Q5W0B7 351 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 FAM45BPQ6NSW5 357 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 RBM23Q86U06 439 aaKnown RBP4.85□□□□□ -1.63
LIMA1-214ENST00000552783 RIOX2Q8IUF8 465 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 SLC22A15Q8IZD6 547 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 SPARTQ8N0X7 666 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 CLIP4Q8N3C7 705 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 OR6J1Q8NGC5 347 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 RDH11Q8TC12 318 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 FAM45AQ8TCE6 357 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 CASP10Q92851 521 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 EXT2Q93063 718 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 CDCA5Q96FF9 252 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 RHNO1Q9BSD3 238 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 ADNPQ9H2P0 1102 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 MRPL46Q9H2W6 279 aaKnown RBP4.85□□□□□ -1.63
LIMA1-214ENST00000552783 GSTO2Q9H4Y5 243 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 CARS2Q9HA77 564 aaKnown RBP4.85□□□□□ -1.63
LIMA1-214ENST00000552783 CYP3A43Q9HB55 503 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 SLC52A3Q9NQ40 469 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 SMPD3Q9NY59 655 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-214ENST00000552783 NUDT5Q9UKK9 219 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 PSME2Q9UL46 239 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 INVSQ9Y283 1065 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 BTRCQ9Y297 605 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 PCDHGA8Q9Y5G5 932 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 DNAJC15Q9Y5T4 150 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 IGKV6-21A0A0C4DH24 114 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 IQCA1LA6NCM1 817 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 TRPC5OSA6NMA1 111 aa4.85□□□□□ -1.63
LIMA1-214ENST00000552783 HACD1B0YJ81 288 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms