RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 NSMCE3Q96MG7 304 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 DNAJC7Q99615 494 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 LGR4Q9BXB1 951 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 MAK16Q9BXY0 300 aaKnown RBP10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 XPO4Q9C0E2 1151 aaKnown RBP10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 TMEM168Q9H0V1 697 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 SYNDIG1Q9H7V2 258 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 CARS2Q9HA77 564 aaKnown RBP10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 NT5MQ9NPB1 228 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 RBM22Q9NW64 420 aaKnown RBP eCLIP10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 AKAP7Q9P0M2 348 aaPredicted RBP10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 LRIT1Q9P2V4 623 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 NENFQ9UMX5 172 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 SLC17A4Q9Y2C5 497 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 PCDHGA7Q9Y5G6 932 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 CELSR3Q9NYQ7 3312 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 A0A0J9YYE9 177 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 TTC24A2A3L6 582 aaPredicted RBP10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 RGSL1A5PLK6 1076 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 NPIPB15A6NHN6 443 aaPredicted RBP10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 CDRT15L2A8MXV6 281 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 D6RAR5 112 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 ATXN7O15265 892 aaPredicted RBP10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 KLK10O43240 276 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 FZD6O60353 706 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 TNFSF15O95150 251 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 TRBC1P01850 177 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 CEACAM5P06731 702 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 IVLP07476 585 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 ZFXP17010 805 aaPredicted RBP10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 GPR1P46091 355 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 CCL7P80098 99 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 RHDQ02161 417 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 MMRN1Q13201 1228 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 COL9A2Q14055 689 aaPredicted RBP10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 HLTFQ14527 1009 aaKnown RBP eCLIP10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 NCBP2-AS2Q69YL0 99 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 ADAMTSL4Q6UY14 1074 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 Q6ZVL8 140 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 HSD11B1LQ7Z5J1 315 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 CLEC14AQ86T13 490 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 CCNJLQ8IV13 435 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 RHOT2Q8IXI1 618 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 FBXO39Q8N4B4 442 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 EXD1Q8NHP7 514 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 AP2M1Q96CW1 435 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 WBP1Q96G27 269 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 CCDC42Q96M95 316 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 CMKLR1Q99788 373 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 ADGRE3Q9BY15 652 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 FRMD8Q9BZ67 464 aaPredicted RBP10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 B3GNT4Q9C0J1 378 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 BRD8Q9H0E9 1235 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 CDH19Q9H159 772 aa10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 MRPL40Q9NQ50 206 aaKnown RBP10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.86□□□□□ -0.67
VTI1BP3-201ENST00000550220 FASNP49327 2511 aaKnown RBP10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 GOLGA6CA6NDK9 693 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 GOLGA6BA6NDN3 693 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 RHPN2P1A8MT19 583 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 B4DGG1 531 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 ERVH48-1M5A8F1 160 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 MFSD11O43934 449 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 NOBOXO60393 691 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 CD48P09326 243 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 GOLGA6DP0CG33 693 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 HOXB3P14651 431 aaPredicted RBP10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 LHCGRP22888 699 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 KDELR1P24390 212 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 SLC1A1P43005 524 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 GPR3P46089 330 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 GNPDA1P46926 289 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 CXADRP78310 365 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 SKOR1P84550 965 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 PTSQ03393 145 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 ZFP36L1Q07352 338 aaKnown RBP10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 LRP8Q14114 963 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 ASTE1Q2TB18 679 aaPredicted RBP10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 ODF2Q5BJF6 829 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 LRRC38Q5VT99 294 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 LRRC66Q68CR7 880 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 FOXR1Q6PIV2 292 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 BZW1Q7L1Q6 419 aaKnown RBP10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 RAB11FIP2Q7L804 512 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 SPRED1Q7Z699 444 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 C17orf82Q86X59 251 aaPredicted RBP10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 CCDC13Q8IYE1 715 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 Q8N9G6 341 aaPredicted RBP10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 CCNYQ8ND76 341 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 CCHCR1Q8TD31 782 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 ZDHHC1Q8WTX9 485 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 SNRNP27Q8WVK2 155 aaKnown RBP10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 SLC39A7Q92504 469 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 HDAC11Q96DB2 347 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 SCARF2Q96GP6 870 aaPredicted RBP10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 PRR11Q96HE9 360 aaPredicted RBP10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 LYSMD1Q96S90 227 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 DPYSL5Q9BPU6 564 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 TDRD1Q9BXT4 1180 aaKnown RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms