RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 MIR1-1HGQ9H1L0 117 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 EPC1Q9H2F5 836 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 FAM86C1Q9NVL1 165 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 PKD2L2Q9NZM6 624 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 IL17CQ9P0M4 197 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 CA5BQ9Y2D0 317 aa21.16■□□□□ 0.98
VPS29-206ENST00000549578 PLXNA2O75051 1894 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 MYO15AQ9UKN7 3530 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 NDC80O14777 642 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 LPOP22079 712 aaPredicted RBP21.15■□□□□ 0.98
VPS29-206ENST00000549578 ITPKAP23677 461 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 CD27P26842 260 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 ZNF140P52738 457 aaPredicted RBP21.15■□□□□ 0.98
VPS29-206ENST00000549578 WSCD2Q2TBF2 565 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 ZDHHC24Q6UX98 284 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 KDM7AQ6ZMT4 941 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 AGGF1Q8N302 714 aaeCLIP21.15■□□□□ 0.98
VPS29-206ENST00000549578 TP53I13Q8NBR0 393 aaPredicted RBP21.15■□□□□ 0.98
VPS29-206ENST00000549578 OR4K2Q8NGD2 314 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 OR13C4Q8NGS5 318 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 FBXO25Q8TCJ0 367 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 ASB12Q8WXK4 309 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 ART4Q93070 314 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 SCAMP4Q969E2 229 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 KCNH6Q9H252 994 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 MBNL1Q9NR56 388 aaKnown RBP21.15■□□□□ 0.98
VPS29-206ENST00000549578 FNDC3AQ9Y2H6 1198 aaKnown RBP21.15■□□□□ 0.98
VPS29-206ENST00000549578 ATXN2Q99700 1313 aaKnown RBP21.15■□□□□ 0.98
VPS29-206ENST00000549578 DMDP11532 3685 aa21.15■□□□□ 0.98
VPS29-206ENST00000549578 TNRC6BQ9UPQ9 1833 aaKnown RBP21.14■□□□□ 0.98
VPS29-206ENST00000549578 HEATR9A2RTY3 570 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 MROH6A6NGR9 719 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 STX7O15400 261 aaKnown RBP21.14■□□□□ 0.98
VPS29-206ENST00000549578 BANF1O75531 89 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 BPIP17213 487 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 HNRNPA2B1P22626 353 aaKnown RBP21.14■□□□□ 0.98
VPS29-206ENST00000549578 ADRA1DP25100 572 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 TMPRSS15P98073 1019 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 LRRC14Q15048 493 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 AGERQ15109 404 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 IRF4Q15306 451 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 MSS51Q4VC12 460 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 WDR45BQ5MNZ6 344 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 ALS2CLQ60I27 953 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 CYP2U1Q7Z449 544 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 PELI3Q8N2H9 469 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 GPR26Q8NDV2 337 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 PPHLN1Q8NEY8 458 aaKnown RBP21.14■□□□□ 0.98
VPS29-206ENST00000549578 DNASE2BQ8WZ79 361 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 SERAC1Q96JX3 654 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 DNAJC1Q96KC8 554 aaKnown RBP21.14■□□□□ 0.98
VPS29-206ENST00000549578 ZNF778Q96MU6 729 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 RANBP9Q96S59 729 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 C1QTNF7Q9BXJ2 289 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 ABCG8Q9H221 673 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 CHRAC1Q9NRG0 131 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 DMTF1Q9Y222 760 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 PKP3Q9Y446 797 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 TCAF1Q9Y4C2 921 aa21.14■□□□□ 0.98
VPS29-206ENST00000549578 CCL22O00626 93 aa21.14■□□□□ 0.97
VPS29-206ENST00000549578 PCCBP05166 539 aa21.14■□□□□ 0.97
VPS29-206ENST00000549578 NUDT1P36639 197 aa21.14■□□□□ 0.97
VPS29-206ENST00000549578 CLDN2P57739 230 aa21.14■□□□□ 0.97
VPS29-206ENST00000549578 DHX9Q08211 1270 aaKnown RBP21.14■□□□□ 0.97
VPS29-206ENST00000549578 HIF1AQ16665 826 aa21.14■□□□□ 0.97
VPS29-206ENST00000549578 PCID2Q5JVF3 399 aa21.14■□□□□ 0.97
VPS29-206ENST00000549578 CASC4Q6P4E1 433 aa21.14■□□□□ 0.97
VPS29-206ENST00000549578 CENPTQ96BT3 561 aa21.14■□□□□ 0.97
VPS29-206ENST00000549578 AP2M1Q96CW1 435 aa21.14■□□□□ 0.97
VPS29-206ENST00000549578 SLC6A18Q96N87 628 aa21.14■□□□□ 0.97
VPS29-206ENST00000549578 FRMD8Q9BZ67 464 aaPredicted RBP21.14■□□□□ 0.97
VPS29-206ENST00000549578 IRF2BPLQ9H1B7 796 aa21.14■□□□□ 0.97
VPS29-206ENST00000549578 FAM114A2Q9NRY5 505 aa21.14■□□□□ 0.97
VPS29-206ENST00000549578 HCN4Q9Y3Q4 1203 aa21.14■□□□□ 0.97
VPS29-206ENST00000549578 SDR42E2A6NKP2 422 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 PRAMEF26H0Y7S4 382 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 AKT2P31751 481 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 IGFALSP35858 605 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 ARL4CP56559 192 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 PDE1BQ01064 536 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 CAV1Q03135 178 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 BBS9Q3SYG4 887 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 MICALCLQ6ZW33 695 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 NRSN1Q8IZ57 195 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 PDIK1LQ8N165 341 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 ZCCHC9Q8N567 271 aaKnown RBP21.13■□□□□ 0.97
VPS29-206ENST00000549578 TMEM145Q8NBT3 493 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 PLA2G15Q8NCC3 412 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 IFT81Q8WYA0 676 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 SIGLEC10Q96LC7 697 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 LENG8Q96PV6 779 aaPredicted RBP21.13■□□□□ 0.97
VPS29-206ENST00000549578 TRIM56Q9BRZ2 755 aaKnown RBP21.13■□□□□ 0.97
VPS29-206ENST00000549578 RIOK2Q9BVS4 552 aaKnown RBP21.13■□□□□ 0.97
VPS29-206ENST00000549578 FAM83DQ9H4H8 585 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 SLC2A6Q9UGQ3 507 aa21.13■□□□□ 0.97
VPS29-206ENST00000549578 SMG5Q9UPR3 1016 aaKnown RBP21.13■□□□□ 0.97
VPS29-206ENST00000549578 RGSL1A5PLK6 1076 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 H0Y8X5 98 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 K7ESM1 405 aa21.12■□□□□ 0.97
VPS29-206ENST00000549578 PPFIA2O75334 1257 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 165.5 ms