RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	CPEB1	Q9BZB8	566 aa	Known RBP	7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	KLC2	Q9H0B6	622 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	THAP2	Q9H0W7	228 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	SP110	Q9HB58	689 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	GPR27	Q9NS67	375 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	MYO1A	Q9UBC5	1043 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	DKK3	Q9UBP4	350 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	LHX3	Q9UBR4	397 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	FTSJ1	Q9UET6	329 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	PCSK1N	Q9UHG2	260 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	IP6K2	Q9UHH9	426 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	ANAPC7	Q9UJX3	599 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	KLK13	Q9UKR3	277 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	NENF	Q9UMX5	172 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	ZFR2	Q9UPR6	939 aa	Known RBP	7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	MSRB2	Q9Y3D2	182 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	AKAP13	Q12802	2813 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	FRY	Q5TBA9	3013 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	KIF26B	Q2KJY2	2108 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	KCNK3	O14649	394 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	AREL1	O15033	823 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	DAPK3	O43293	454 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	ITGAV	P06756	1048 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	PROS1	P07225	676 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	THEGL	P0DJG4	465 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	ERCC2	P18074	760 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	SPINK2	P20155	84 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	IL1R2	P27930	398 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	GK	P32189	559 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	ARL4A	P40617	200 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	PREP	P48147	710 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	GIPR	P48546	466 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	SLC25A11	Q02978	314 aa	Known RBP	7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	FGL2	Q14314	439 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	RFTN1	Q14699	578 aa	Predicted RBP	7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	SMTNL2	Q2TAL5	461 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	BOLA3	Q53S33	107 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	GDPD4	Q6W3E5	623 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	LEKR1	Q6ZMV7	388 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	GCNT7	Q6ZNI0	430 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	KANSL1	Q7Z3B3	1105 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	PTAR1	Q7Z6K3	402 aa	Predicted RBP	7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	GATAD2A	Q86YP4	633 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	DCP2	Q8IU60	420 aa	Known RBP	7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	MCAT	Q8IVS2	390 aa	Known RBP	7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	ARHGAP12	Q8IWW6	846 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	SLC22A18AS	Q8N1D0	253 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	LZTR1	Q8N653	840 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	HCAR2	Q8TDS4	363 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	CELF6	Q96J87	481 aa	Known RBP	7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	FEM1C	Q96JP0	617 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	EXOC2	Q96KP1	924 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	DHRS1	Q96LJ7	313 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	KLHL32	Q96NJ5	620 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	TUBGCP5	Q96RT8	1024 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	DNAJC7	Q99615	494 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	MYOC	Q99972	504 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	NUP85	Q9BW27	656 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	SLC17A9	Q9BYT1	436 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	SLC39A8	Q9C0K1	460 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	TSPY26P	Q9H489	355 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	FZD3	Q9NPG1	666 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	ACTR10	Q9NZ32	417 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	CWC15	Q9P013	229 aa	Known RBP	7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	RCOR3	Q9P2K3	495 aa	Predicted RBP	7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	LCMT1	Q9UIC8	334 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	CA5B	Q9Y2D0	317 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	PCDHGA1	Q9Y5H4	931 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	CORIN	Q9Y5Q5	1042 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	APC2	O95996	2303 aa		7.75	□□□□□ -1.17
SNHG1-223	ENST00000545440	ADAMTS20	P59510	1910 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	FAM95C	A0A1B0GW59	222 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	SSU72P8	A0A1W2PR75	194 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	C1QTNF9B	B2RNN3	333 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440		J3KR12	359 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	MYO1F	O00160	1098 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	DFFA	O00273	331 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	NEMP1	O14524	444 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	PALM	O75781	387 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	TPM1	P09493	284 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	ATXN1L	P0C7T5	689 aa	Known RBP	7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	C1QTNF9	P0C862	333 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	CDK4	P11802	303 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	TCF4	P15884	667 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	SERPINA4	P29622	427 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	SERPINB6	P35237	376 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	RABIF	P47224	123 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	CSNK1D	P48730	415 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	PAPOLA	P51003	745 aa	Known RBP	7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	IL10RB	Q08334	325 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	ELP6	Q0PNE2	266 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	CYTH1	Q15438	398 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	NFKBIB	Q15653	356 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	SLC18A3	Q16572	532 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	CCDC122	Q5T0U0	273 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	BRAT1	Q6PJG6	821 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	TMCO3	Q6UWJ1	677 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440		Q6ZS46	218 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	NLRC3	Q7RTR2	1065 aa		7.74	□□□□□ -1.17

Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms