RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 PLEKHM1Q9Y4G2 1056 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 USP9XQ93008 2570 aaPredicted RBP17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 TTC24A2A3L6 582 aaPredicted RBP17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 ZNF891A8MT65 544 aaPredicted RBP17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 B4E171 279 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 ZW10O43264 779 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 CSTF2P33240 577 aaKnown RBP eCLIP17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 ADCY8P40145 1251 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 ETV3P41162 512 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 TSPAN7P41732 249 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 SCNN1BP51168 640 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 ANKS6Q68DC2 871 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 DNAJC24Q6P3W2 148 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 HSD11B1LQ7Z5J1 315 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 NPWQ8N729 165 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 DTD2Q96FN9 168 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 ASPSCR1Q9BZE9 553 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 FAM207AQ9NSI2 230 aaPredicted RBP17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 PDP2Q9P2J9 529 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 AP4E1Q9UPM8 1137 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 SLC17A4Q9Y2C5 497 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 MAN2B2Q9Y2E5 1009 aa17.78■□□□□ 0.44
CLSTN3-214ENST00000542663 EFCAB7A8K855 629 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 EEF2KO00418 725 aaKnown RBP17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 HEXIM1O94992 359 aaKnown RBP17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 LHCGRP22888 699 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 EEF1GP26641 437 aaKnown RBP17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 AP1S1P61966 158 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 UBE2HP62256 183 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 DCAF12Q5T6F0 453 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 DENND2CQ68D51 928 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 TMEM71Q6P5X7 295 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 FAM129CQ86XR2 697 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 TP53INP2Q8IXH6 220 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 PAF1Q8N7H5 531 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 C9orf43Q8TAL5 461 aaPredicted RBP17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 RTP4Q96DX8 246 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 PSKH2Q96QS6 385 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 SP110Q9HB58 689 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 KCNK4Q9NYG8 393 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 DONSONQ9NYP3 566 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 PCDHGC4Q9Y5F7 938 aa17.77■□□□□ 0.44
CLSTN3-214ENST00000542663 LOC101059948A0A1B0GTJ6 334 aa17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 CAPN5O15484 640 aaPredicted RBP17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 HTRA2O43464 458 aaPredicted RBP17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 IVLP07476 585 aa17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 PRKAR1AP10644 381 aa17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 VIPR1P32241 457 aa17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 IL10RBQ08334 325 aa17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 SLC10A7Q0GE19 358 aa17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 CDC20Q12834 499 aa17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 BIRC2Q13490 618 aa17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 BECN1Q14457 450 aa17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 RFTN1Q14699 578 aaPredicted RBP17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 PTPRRQ15256 657 aa17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 TIPARPQ7Z3E1 657 aaKnown RBP17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 ZNF761Q86XN6 746 aaPredicted RBP17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 SCARF2Q96GP6 870 aaPredicted RBP17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 DPYSL5Q9BPU6 564 aa17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 GPN2Q9H9Y4 310 aaPredicted RBP17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 SIK3Q9Y2K2 1263 aa17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 TNRC6AQ8NDV7 1962 aaKnown RBP17.76■□□□□ 0.43
CLSTN3-214ENST00000542663 ANKRD62A6NC57 917 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 DFFAO00273 331 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 SOD1P00441 154 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 ERCC2P18074 760 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 TEAD1P28347 426 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 OAS2P29728 719 aaKnown RBP17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 ACTR1BP42025 376 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 RAB15P59190 212 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 ACTR1AP61163 376 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 GPLD1P80108 840 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 Q6ZVL8 140 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 NRSN1Q8IZ57 195 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 UNC5BQ8IZJ1 945 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 NLGN4XQ8N0W4 816 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 PGBD5Q8N414 524 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 ARFGAP1Q8N6T3 406 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 NLGN4YQ8NFZ3 816 aaPredicted RBP17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 ABHD17AQ96GS6 310 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 PSMG3-AS1Q96PY0 264 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 PEBP4Q96S96 227 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 KCTD15Q96SI1 283 aaPredicted RBP17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 CTRCQ99895 268 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 SNRNP25Q9BV90 132 aaKnown RBP17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 DHX35Q9H5Z1 703 aaKnown RBP17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 KCTD5Q9NXV2 234 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 PLAAQ9Y263 795 aa17.75■□□□□ 0.43
CLSTN3-214ENST00000542663 ICE1Q9Y2F5 2266 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 A0A0U1RQS6 177 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 NPIPB15A6NHN6 443 aaPredicted RBP17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 CPP00450 1065 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 TNFAIP3P21580 790 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 FASLGP48023 281 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 MC2RQ01718 297 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 LBRQ14739 615 aaKnown RBP17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 NCAPHQ15003 741 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 KRT31Q15323 416 aa17.74■□□□□ 0.43
CLSTN3-214ENST00000542663 RAET1GQ6H3X3 334 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms