RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 RHOCP08134 193 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 MAPKAPK2P49137 400 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 SULT2A1Q06520 285 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 DPYSQ14117 519 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 DLG2Q15700 870 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 MANEALQ5VSG8 457 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 CXorf57Q6NSI4 855 aaKnown RBP12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 KYAT3Q6YP21 454 aaKnown RBP12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 Q6ZVU0 165 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 PTAR1Q7Z6K3 402 aaPredicted RBP12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 PARGQ86W56 976 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 LZTR1Q8N653 840 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 RTL3Q8N8U3 475 aaKnown RBP12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 ZSCAN1Q8NBB4 408 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 MNS1Q8NEH6 495 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 LMX1AQ8TE12 382 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 NAT6Q93015 286 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 IL12RB2Q99665 862 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 FOXP3Q9BZS1 431 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 TCEAL2Q9H3H9 227 aaPredicted RBP12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 RETREG1Q9H6L5 497 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 EPB41L5Q9HCM4 733 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 TMEM248Q9NWD8 314 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 PLEKHB1Q9UF11 243 aaPredicted RBP12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 PLAAQ9Y263 795 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 MRFAP1Q9Y605 127 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 MED13Q9UHV7 2174 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 IGLV3-10A0A075B6K4 115 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 PRAMEF33A0A0G2JMD5 474 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 A0A1W2PQM1 296 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 DRGXA6NNA5 263 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 LMO7DNF2Z398 122 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 APOC4-APOC2K7ER74 178 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 PRAMEF10O60809 474 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 CNTN5O94779 1100 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 APOC2P02655 101 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 JUNDP17535 347 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 IL4RP24394 825 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 CCKBRP32239 447 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 KCNAB2Q13303 367 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 TAZQ16635 292 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 ALFQ53S48 1182 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 NCBP2-AS2Q69YL0 99 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 SLC9A4Q6AI14 798 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 CREG2Q8IUH2 290 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 PQLC3Q8N755 202 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 CEP112Q8N8E3 955 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 OR52K2Q8NGK3 314 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 KLF6Q99612 283 aaPredicted RBP12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 FERMT1Q9BQL6 677 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 AP1M1Q9BXS5 423 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 SLC17A9Q9BYT1 436 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 HOMER3Q9NSC5 361 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 SMARCAL1Q9NZC9 954 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 FOXJ2Q9P0K8 574 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 SEPT10Q9P0V9 454 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 TUBD1Q9UJT1 453 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 ANAPC2Q9UJX6 822 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 TTC7AQ9ULT0 858 aaPredicted RBP12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 PADI4Q9UM07 663 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 OR51B4Q9Y5P0 310 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 APCP25054 2843 aa12.56□□□□□ -0.4
CLSTN3-208ENST00000538933 PDZD2O15018 2839 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 CTAGE15A4D2H0 777 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 ARHGAP42A6NI28 874 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 WASH4PA8MWX3 477 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 D6RAR5 112 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 H3BM21 787 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 TMX2-CTNND1H3BSU7 103 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 H7C0C1 242 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 DFFAO00273 331 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 PPP1R12AO14974 1030 aaPredicted RBP12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 YY2O15391 372 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 MFSD11O43934 449 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 RAMP2O60895 175 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 PAK4O96013 591 aaPredicted RBP12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 CTAGE8P0CG41 777 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 ITIH1P19827 911 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 MX2P20592 715 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 ETFBP38117 255 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 ETV5P41161 510 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 ATP5OP48047 213 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 CD97P48960 835 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 NR2C2P49116 596 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 RPIAP49247 311 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 IRAK1P51617 712 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 OXCT1P55809 520 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 POLE2P56282 527 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 CCL7P80098 99 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 OTUD4Q01804 1114 aaKnown RBP12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 PDK1Q15118 436 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 C5orf22Q49AR2 442 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 ACCSLQ4AC99 568 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 BORAQ6PGQ7 559 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 NPNTQ6UXI9 565 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 CTAGE6Q86UF2 777 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 CTAGE4Q8IX94 777 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 ZNF683Q8IZ20 524 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 RBFAQ8N0V3 343 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 SH2D3CQ8N5H7 860 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms