RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 RFX5P48382 616 aaPredicted RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 GLUD2P49448 558 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 BLKP51451 505 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 EIF5P55010 431 aaKnown RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 RIPK4P57078 832 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 ABATP80404 500 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 ADORA2A-AS1P86434 159 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 LTBQ06643 244 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 DDR1Q08345 913 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 DMTNQ08495 405 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 ST3GAL1Q11201 340 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 SHBQ15464 509 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 ME3Q16798 604 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 ZNF284Q2VY69 593 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 DCAF6Q58WW2 860 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 SH2D4BQ5SQS7 431 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 GFI1BQ5VTD9 330 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 MMS22LQ6ZRQ5 1243 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 TRILQ7L0X0 811 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 MCPH1Q8NEM0 835 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 PPHLN1Q8NEY8 458 aaKnown RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 HERVK_113Q902F9 699 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 TMEM18Q96B42 140 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 GCC1Q96CN9 775 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 APOLD1Q96LR9 279 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 COG8Q96MW5 612 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 GFM1Q96RP9 751 aaKnown RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 POLDIP3Q9BY77 421 aaKnown RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 PNNQ9H307 717 aaKnown RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 WDR6Q9NNW5 1121 aaKnown RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 TLR8Q9NR97 1041 aaKnown RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 IFT80Q9P2H3 777 aaPredicted RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 ISY1Q9ULR0 285 aaKnown RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 SLC45A1Q9Y2W3 748 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 USP16Q9Y5T5 823 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 PTGDR2Q9Y5Y4 395 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 TRIP12Q14669 1992 aaPredicted RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 SCN4AP35499 1836 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 CARMIL3Q8ND23 1372 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 C17orf113A0A1B0GUU1 675 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 A0A1B0GVT2 93 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 TARSL2A2RTX5 802 aaKnown RBP3.62□□□□□ -1.83
USP48-215ENST00000534705 PEX12O00623 359 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 LIASO43766 372 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 SLC28A2O43868 658 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 IL1AP01583 271 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 ZNF853P0CG23 659 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 NAGAP17050 411 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 CTPS1P17812 591 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 HMGB2P26583 209 aaKnown RBP3.62□□□□□ -1.83
USP48-215ENST00000534705 COPB2P35606 906 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 GPD2P43304 727 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 PTPN9P43378 593 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 PIP4K2AP48426 406 aaPredicted RBP3.62□□□□□ -1.83
USP48-215ENST00000534705 AMTP48728 403 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 NUDT6P53370 316 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 TMPRSS3P57727 454 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 SLC18A2Q05940 514 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 FAM27E3Q08E93 113 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 TEFQ10587 303 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 KEAP1Q14145 624 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 KCTD2Q14681 263 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 TAF7Q15545 349 aaPredicted RBP3.62□□□□□ -1.83
USP48-215ENST00000534705 SLC18A3Q16572 532 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 TDRD12Q587J7 1177 aaKnown RBP3.62□□□□□ -1.83
USP48-215ENST00000534705 EFHC1Q5JVL4 640 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 FBXL22Q6P050 247 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 FAM83HQ6ZRV2 1179 aaPredicted RBP3.62□□□□□ -1.83
USP48-215ENST00000534705 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.62□□□□□ -1.83
USP48-215ENST00000534705 PALB2Q86YC2 1186 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 GHDCQ8N2G8 530 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 LSM14AQ8ND56 463 aaKnown RBP3.62□□□□□ -1.83
USP48-215ENST00000534705 FAM216AQ8WUB2 273 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 SNRNP27Q8WVK2 155 aaKnown RBP3.62□□□□□ -1.83
USP48-215ENST00000534705 HSPH1Q92598 858 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 ZSCAN31Q96LW9 406 aaPredicted RBP3.62□□□□□ -1.83
USP48-215ENST00000534705 CD180Q99467 661 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 REEP2Q9BRK0 252 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 SEZ6LQ9BYH1 1024 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 TAOK3Q9H2K8 898 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 MIS18AQ9NYP9 233 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 NLKQ9UBE8 527 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 NARFQ9UHQ1 456 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 DGKBQ9Y6T7 804 aa3.62□□□□□ -1.83
USP48-215ENST00000534705 MYO5AQ9Y4I1 1855 aaKnown RBP3.62□□□□□ -1.83
USP48-215ENST00000534705 WDR90Q96KV7 1748 aa3.61□□□□□ -1.83
USP48-215ENST00000534705 IGHV4-28A0A0C4DH34 117 aa3.61□□□□□ -1.83
USP48-215ENST00000534705 GOLGA6L10A0A0M3HER8 536 aa3.61□□□□□ -1.83
USP48-215ENST00000534705 SH2D7A6NKC9 451 aaPredicted RBP3.61□□□□□ -1.83
USP48-215ENST00000534705 CHL1O00533 1208 aa3.61□□□□□ -1.83
USP48-215ENST00000534705 KLK10O43240 276 aa3.61□□□□□ -1.83
USP48-215ENST00000534705 CAMTA2O94983 1202 aa3.61□□□□□ -1.83
USP48-215ENST00000534705 MMP10P09238 476 aa3.61□□□□□ -1.83
USP48-215ENST00000534705 MYF6P23409 242 aa3.61□□□□□ -1.83
USP48-215ENST00000534705 HOXA11P31270 313 aaPredicted RBP3.61□□□□□ -1.83
USP48-215ENST00000534705 TTKP33981 857 aa3.61□□□□□ -1.83
USP48-215ENST00000534705 THPOP40225 353 aa3.61□□□□□ -1.83
USP48-215ENST00000534705 ARSFP54793 590 aa3.61□□□□□ -1.83
USP48-215ENST00000534705 GEMIN4P57678 1058 aaKnown RBP3.61□□□□□ -1.83
USP48-215ENST00000534705 UBE3AQ05086 875 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms