RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	TTC7A	Q9ULT0	858 aa	Predicted RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	AMDHD2	Q9Y303	409 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	AAR2	Q9Y312	384 aa	Known RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	UTY	O14607	1347 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296		A0A0B4J293	547 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296		A0A0G2JPF8	293 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	ANKRD18B	A2A2Z9	1011 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	TMEM202	A6NGA9	273 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296		B4E171	279 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	HNRNPCL3	B7ZW38	293 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	USP17L23	D6RBM5	183 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	SOCS6	O14544	535 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	AP3D1	O14617	1153 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	PLRG1	O43660	514 aa	Known RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	KLK8	O60259	260 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	SEC14L2	O76054	403 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	CLDN14	O95500	239 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	TBX18	O95935	607 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	F9	P00740	461 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	CD4	P01730	458 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	ATP1A1	P05023	1023 aa	Known RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	UROD	P06132	367 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	HNRNPCL4	P0DMR1	293 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	CETP	P11597	493 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	PSMA4	P25789	261 aa	Known RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	USP8	P40818	1118 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	TSPAN7	P41732	249 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	GNAQ	P50148	359 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	TUB	P50607	506 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	DLX5	P56178	289 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	RPL7A	P62424	266 aa	Known RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	SET	Q01105	290 aa	Predicted RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	DCTN2	Q13561	401 aa	Known RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	RNPS1	Q15287	305 aa	Known RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	TST	Q16762	297 aa	Known RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	DPCR1	Q3MIW9	517 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	MMEL1	Q495T6	779 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	FAM76B	Q5HYJ3	339 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	OTUD3	Q5T2D3	398 aa	Predicted RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	SLC9C2	Q5TAH2	1124 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	WDR73	Q6P4I2	378 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	TMEM154	Q6P9G4	183 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	LCTL	Q6UWM7	567 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	SLC36A4	Q6YBV0	504 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	TAOK1	Q7L7X3	1001 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	TEX11	Q8IYF3	940 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	PLD5	Q8N7P1	536 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	C1orf131	Q8NDD1	294 aa	Known RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	TDRD7	Q8NHU6	1098 aa	Known RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	WFIKKN2	Q8TEU8	576 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	ZBTB10	Q96DT7	871 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	KLHL15	Q96M94	604 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	HARBI1	Q96MB7	349 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	UHRF2	Q96PU4	802 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	SLITRK1	Q96PX8	696 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	IFIH1	Q9BYX4	1025 aa	Known RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	TTYH1	Q9H313	450 aa	Predicted RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	NDST4	Q9H3R1	872 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	SH2D4A	Q9H788	454 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	EBF2	Q9HAK2	575 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	NOX4	Q9NPH5	578 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	GPR108	Q9NPR9	543 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	MCM9	Q9NXL9	1143 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	EHD2	Q9NZN4	543 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296	SLC25A10	Q9UBX3	287 aa	Predicted RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	FBXO9	Q9UK97	447 aa	Predicted RBP	2.8	□□□□□ -1.96
CD44-238	ENST00000534296	A4GNT	Q9UNA3	340 aa		2.8	□□□□□ -1.96
CD44-238	ENST00000534296		A0A087X0M5	115 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296		A0A1B0GX30	115 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	FAM172BP	A6NC97	362 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	NDUFS7	O75251	213 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	RNASEH2A	O75792	299 aa	Known RBP	2.79	□□□□□ -1.96
CD44-238	ENST00000534296	SCGB1D1	O95968	90 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	AFP	P02771	609 aa	Known RBP	2.79	□□□□□ -1.96
CD44-238	ENST00000534296	LINC00271	P0C7V0	271 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	UBL4A	P11441	157 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	AGA	P20933	346 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	KCNA5	P22460	613 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	ANOS1	P23352	680 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	TMPO	P42166	694 aa	Known RBP	2.79	□□□□□ -1.96
CD44-238	ENST00000534296	METAP2	P50579	478 aa	Known RBP eCLIP	2.79	□□□□□ -1.96
CD44-238	ENST00000534296	PHEX	P78562	749 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	SORD	Q00796	357 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	ZNF155	Q12901	538 aa	Predicted RBP	2.79	□□□□□ -1.96
CD44-238	ENST00000534296	CCNG2	Q16589	344 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	HYI	Q5T013	277 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	TXNDC8	Q6A555	127 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	RGMB	Q6NW40	437 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	CLEC4G	Q6UXB4	293 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	GSG1L	Q6UXU4	331 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	B3GNT6	Q6ZMB0	384 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	C9orf139	Q6ZV77	190 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	TRMT1L	Q7Z2T5	733 aa	Known RBP	2.79	□□□□□ -1.96
CD44-238	ENST00000534296	SLC46A3	Q7Z3Q1	461 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	TDRP	Q86YL5	185 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	CNTROB	Q8N137	903 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	ZBTB2	Q8N680	514 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	HUS1B	Q8NHY5	278 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	METTL6	Q8TCB7	284 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	FAM149B1	Q96BN6	582 aa		2.79	□□□□□ -1.96

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