RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 FZD6O60353 706 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 JCHAINP01591 159 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 TRBC1P01850 177 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 PDHA1P08559 390 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 PNLIPP16233 465 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 ZFXP17010 805 aaPredicted RBP13.64□□□□□ -0.23
TCOF1-215ENST00000515516 GNPDA1P46926 289 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 RPL26P61254 145 aaKnown RBP13.64□□□□□ -0.23
TCOF1-215ENST00000515516 CDK3Q00526 305 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 DPTQ07507 201 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 C14orf28Q4W4Y0 310 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 LRRC66Q68CR7 880 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 KCTD16Q68DU8 428 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 CCNJLQ8IV13 435 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 PELI3Q8N2H9 469 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 PQLC3Q8N755 202 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 KCNE4Q8WWG9 221 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 AP2M1Q96CW1 435 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 HDAC11Q96DB2 347 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 CCDC97Q96F63 343 aaPredicted RBP13.64□□□□□ -0.23
TCOF1-215ENST00000515516 TMEM74Q96NL1 305 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 CHP1Q99653 195 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 LRRN3Q9H3W5 708 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 PCDH9Q9HC56 1237 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 EPB41L5Q9HCM4 733 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 SPTLC3Q9NUV7 552 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 TRNAU1APQ9NX07 287 aaKnown RBP13.64□□□□□ -0.23
TCOF1-215ENST00000515516 DTLQ9NZJ0 730 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 LRIT1Q9P2V4 623 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 CD84Q9UIB8 345 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 RPL26L1Q9UNX3 145 aaKnown RBP13.64□□□□□ -0.23
TCOF1-215ENST00000515516 PCDHGA8Q9Y5G5 932 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 HEY1Q9Y5J3 304 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 DMXL2Q8TDJ6 3036 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 FAM208BQ5VWN6 2430 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 ARID1BQ8NFD5 2236 aaPredicted RBP13.64□□□□□ -0.23
TCOF1-215ENST00000515516 FREM2Q5SZK8 3169 aa13.64□□□□□ -0.23
TCOF1-215ENST00000515516 ANKRD11Q6UB99 2663 aaPredicted RBP13.64□□□□□ -0.23
TCOF1-215ENST00000515516 ZNF487B1APH4 448 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 KRT1P04264 644 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 HLA-DQB2P05538 268 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 CEACAM5P06731 702 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 TNNT1P13805 278 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 MLLT3P42568 568 aaPredicted RBP13.63□□□□□ -0.23
TCOF1-215ENST00000515516 SLC1A1P43005 524 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 UCNP55089 124 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 INHBCP55103 352 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 AP1B1Q10567 949 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 EIF3IQ13347 325 aaKnown RBP13.63□□□□□ -0.23
TCOF1-215ENST00000515516 PDK1Q15118 436 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 PTPRRQ15256 657 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 CERCAMQ5T4B2 595 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 ALG1LQ6GMV1 187 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 DOK6Q6PKX4 331 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 IGF2-ASQ6U949 168 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 TECPR1Q7Z6L1 1165 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 RFX6Q8HWS3 928 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 SPACA3Q8IXA5 215 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 NRSN1Q8IZ57 195 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 LPCAT1Q8NF37 534 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 CCL4L1Q8NHW4 92 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 CCHCR1Q8TD31 782 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 GPBAR1Q8TDU6 330 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 ZDHHC1Q8WTX9 485 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 LRRN4Q8WUT4 740 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 CRELD1Q96HD1 420 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 HIC2Q96JB3 615 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 SLC46A1Q96NT5 459 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 FCRL3Q96P31 734 aaPredicted RBP13.63□□□□□ -0.23
TCOF1-215ENST00000515516 TDRD1Q9BXT4 1180 aaKnown RBP13.63□□□□□ -0.23
TCOF1-215ENST00000515516 ADGRE3Q9BY15 652 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 FRMD8Q9BZ67 464 aaPredicted RBP13.63□□□□□ -0.23
TCOF1-215ENST00000515516 DPH1Q9BZG8 443 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 ABCG8Q9H221 673 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 DDX56Q9NY93 547 aaKnown RBP13.63□□□□□ -0.23
TCOF1-215ENST00000515516 RABGEF1Q9UJ41 708 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 APPL1Q9UKG1 709 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 INTUQ9ULD6 942 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 SUFUQ9UMX1 484 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 APC2O95996 2303 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 KNTC1P50748 2209 aa13.63□□□□□ -0.23
TCOF1-215ENST00000515516 CAPN8A6NHC0 703 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 RHPN2P1A8MT19 583 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 KCNK1O00180 336 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 PPP1R12AO14974 1030 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-215ENST00000515516 NUDT21O43809 227 aaKnown RBP13.62□□□□□ -0.23
TCOF1-215ENST00000515516 NOBOXO60393 691 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 TNFSF15O95150 251 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 IVLP07476 585 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 CD86P42081 329 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 PTSQ03393 145 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 TLE3Q04726 772 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 SLC10A2Q12908 348 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-215ENST00000515516 HLTFQ14527 1009 aaKnown RBP eCLIP13.62□□□□□ -0.23
TCOF1-215ENST00000515516 LRRC38Q5VT99 294 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 ADAMTSL4Q6UY14 1074 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 ZNF765Q7L2R6 523 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 GPR155Q7Z3F1 870 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 NLRP8Q86W28 1048 aa13.62□□□□□ -0.23
TCOF1-215ENST00000515516 VSIG1Q86XK7 387 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms