RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 PERM1Q5SV97 790 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 C11orf63Q6NUN7 778 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 EFL1Q7Z2Z2 1120 aaKnown RBP11.48□□□□□ -0.57
VCAN-212ENST00000515397 NT5DC3Q86UY8 548 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 HEATR4Q86WZ0 1026 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 KATNAL2Q8IYT4 538 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 GALNT15Q8N3T1 639 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 OR56A4Q8NGH8 313 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 IFI44Q8TCB0 444 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 TFB1MQ8WVM0 346 aaKnown RBP11.48□□□□□ -0.57
VCAN-212ENST00000515397 FATE1Q969F0 183 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 ANP32EQ9BTT0 268 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 RIOK2Q9BVS4 552 aaKnown RBP11.48□□□□□ -0.57
VCAN-212ENST00000515397 WDR26Q9H7D7 661 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 GLOD4Q9HC38 313 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 LUC7LQ9NQ29 371 aaKnown RBP11.48□□□□□ -0.57
VCAN-212ENST00000515397 RALYQ9UKM9 306 aaKnown RBP11.48□□□□□ -0.57
VCAN-212ENST00000515397 GPR34Q9UPC5 381 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 SHOC2Q9UQ13 582 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 PLEKHM1Q9Y4G2 1056 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 CSNK1G3Q9Y6M4 447 aa11.48□□□□□ -0.57
VCAN-212ENST00000515397 KMT2BQ9UMN6 2715 aaPredicted RBP11.47□□□□□ -0.57
VCAN-212ENST00000515397 RP1P56715 2156 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 GRID2IPA4D2P6 1211 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 ANKRD66B4E2M5 251 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 LMO7DNF2Z398 122 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 AGRPO00253 132 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 TOR1BO14657 336 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 OPA1O60313 960 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 FTCDO95954 541 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 MT-CO3P00414 261 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 CAPNS1P04632 268 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 PYGMP11217 842 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 CES1P23141 567 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 CD68P34810 354 aaPredicted RBP11.47□□□□□ -0.57
VCAN-212ENST00000515397 GPR1P46091 355 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 VAV2P52735 878 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 STC1P52823 247 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 KIAA1024LP59773 190 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 TFDP2Q14188 446 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 PRKD1Q15139 912 aaPredicted RBP11.47□□□□□ -0.57
VCAN-212ENST00000515397 NOMO1Q15155 1222 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 ESRP1Q6NXG1 681 aaKnown RBP11.47□□□□□ -0.57
VCAN-212ENST00000515397 ZCCHC8Q6NZY4 707 aaKnown RBP11.47□□□□□ -0.57
VCAN-212ENST00000515397 MARK2Q7KZI7 788 aaKnown RBP11.47□□□□□ -0.57
VCAN-212ENST00000515397 TAF8Q7Z7C8 310 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 TMPRSS12Q86WS5 348 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 VSIG1Q86XK7 387 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 NDUFAF2Q8N183 169 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 FAM181AQ8N9Y4 354 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 KDF1Q8NAX2 398 aaPredicted RBP11.47□□□□□ -0.57
VCAN-212ENST00000515397 EXD1Q8NHP7 514 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 KIAA1524Q8TCG1 905 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 SPOCK2Q92563 424 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 ALG3Q92685 438 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 P3H4Q92791 437 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 AP2M1Q96CW1 435 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 IMP4Q96G21 291 aaKnown RBP11.47□□□□□ -0.57
VCAN-212ENST00000515397 MLPHQ9BV36 600 aaPredicted RBP11.47□□□□□ -0.57
VCAN-212ENST00000515397 DUSP23Q9BVJ7 150 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 ABCG4Q9H172 646 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 CARS2Q9HA77 564 aaKnown RBP11.47□□□□□ -0.57
VCAN-212ENST00000515397 ARFGAP3Q9NP61 516 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 AMACRQ9UHK6 382 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 PRKAB1Q9Y478 270 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 PCDHA3Q9Y5H8 950 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 LAMA5O15230 3695 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 DMXL2Q8TDJ6 3036 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 URB1O60287 2271 aaKnown RBP11.47□□□□□ -0.57
VCAN-212ENST00000515397 CELSR3Q9NYQ7 3312 aa11.47□□□□□ -0.57
VCAN-212ENST00000515397 ZZEF1O43149 2961 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 C1orf232A0A0U1RR37 186 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 PRSS38A1L453 326 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 CAPN8A6NHC0 703 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 SRRM3A6NNA2 597 aaPredicted RBP11.46□□□□□ -0.57
VCAN-212ENST00000515397 H7C0C1 242 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 PJA2O43164 708 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 SOD1P00441 154 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 CEACAM5P06731 702 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 NFKB1P19838 968 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 TGM2P21980 687 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 AK4P27144 223 aaPredicted RBP11.46□□□□□ -0.57
VCAN-212ENST00000515397 RBL1P28749 1068 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 CDC25BP30305 580 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 GNPDA1P46926 289 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 ATP5OP48047 213 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 NR2C2P49116 596 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 BLKP51451 505 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 CDK3Q00526 305 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 ELOCQ15369 112 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 NR0B2Q15466 257 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 ZNF648Q5T619 568 aaPredicted RBP11.46□□□□□ -0.57
VCAN-212ENST00000515397 CCDC181Q5TID7 509 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 PID1Q7Z2X4 250 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 LYSMD3Q7Z3D4 306 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 ZNF567Q8N184 647 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 SLC25A41Q8N5S1 370 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 LRRC57Q8N9N7 239 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 KYQ8NBH2 561 aa11.46□□□□□ -0.57
VCAN-212ENST00000515397 FAM46DQ8NEK8 389 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms