RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 ACTR1BP42025 376 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 RGRP47804 291 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 CSNK1DP48730 415 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 STX17P56962 302 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 ACTR1AP61163 376 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 CDK3Q00526 305 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 PAK1Q13153 545 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 ACOX1Q15067 660 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 SNAP47Q5SQN1 464 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 STRADAQ7RTN6 431 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 ZNF761Q86XN6 746 aaPredicted RBP10.92□□□□□ -0.66
DDX41-216ENST00000513562 FAM114A1Q8IWE2 563 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 MSANTD4Q8NCY6 345 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 OR10G6Q8NH81 332 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 NUS1Q96E22 293 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 AHCYL2Q96HN2 611 aaKnown RBP10.92□□□□□ -0.66
DDX41-216ENST00000513562 TIGD1Q96MW7 591 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 SLC17A4Q9Y2C5 497 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 MAP4K5Q9Y4K4 846 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 ATP6V1DQ9Y5K8 247 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 DOCK4Q8N1I0 1966 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 UNC13CQ8NB66 2214 aa10.92□□□□□ -0.66
DDX41-216ENST00000513562 CENPEQ02224 2701 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 C2CD4BA6NLJ0 364 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 A8MU76 341 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 WASH4PA8MWX3 477 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 SORBS2O94875 1100 aaKnown RBP10.91□□□□□ -0.66
DDX41-216ENST00000513562 FGFR1OPO95684 399 aaKnown RBP10.91□□□□□ -0.66
DDX41-216ENST00000513562 CLDN1O95832 211 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 IVLP07476 585 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 POU3F2P20265 443 aaPredicted RBP10.91□□□□□ -0.66
DDX41-216ENST00000513562 EPHB2P29323 1055 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 DLSTP36957 453 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 PTPN9P43378 593 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 NOP2P46087 812 aaKnown RBP10.91□□□□□ -0.66
DDX41-216ENST00000513562 HDAC4P56524 1084 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 RIPPLY3P57055 190 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 NOMO3P69849 1222 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 ERV3-1Q14264 604 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.91□□□□□ -0.66
DDX41-216ENST00000513562 TAF3Q5VWG9 929 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 SRLQ86TD4 932 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 APLFQ8IW19 511 aaPredicted RBP10.91□□□□□ -0.66
DDX41-216ENST00000513562 UMODL1-AS1Q8N2C9 162 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 SFRP1Q8N474 314 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 SLC37A2Q8TED4 501 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 RXFP2Q8WXD0 754 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 CENPIQ92674 756 aaPredicted RBP10.91□□□□□ -0.66
DDX41-216ENST00000513562 SCARF2Q96GP6 870 aaPredicted RBP10.91□□□□□ -0.66
DDX41-216ENST00000513562 SLC38A3Q99624 504 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 SIDT1Q9NXL6 827 aaKnown RBP10.91□□□□□ -0.66
DDX41-216ENST00000513562 CROTQ9UKG9 612 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 SRPK3Q9UPE1 567 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 OAS3Q9Y6K5 1087 aaKnown RBP10.91□□□□□ -0.66
DDX41-216ENST00000513562 CRYBG3Q68DQ2 2970 aa10.91□□□□□ -0.66
DDX41-216ENST00000513562 CHD5Q8TDI0 1954 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 OTOGQ6ZRI0 2925 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 WIPF3A6NGB9 483 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 A8MX80 341 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 J3KR12 359 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 TRAFD1O14545 582 aaPredicted RBP10.9□□□□□ -0.66
DDX41-216ENST00000513562 PRAMEF11O60813 436 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 KRT38O76015 456 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 ELAVL4P26378 380 aaKnown RBP10.9□□□□□ -0.66
DDX41-216ENST00000513562 TEAD1P28347 426 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 POLD2P49005 469 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 POLR2LP62875 67 aaKnown RBP10.9□□□□□ -0.66
DDX41-216ENST00000513562 BCL2L1Q07817 233 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 CNGA3Q16281 694 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 NAA35Q5VZE5 725 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 PHLDB2Q86SQ0 1253 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 TMEM135Q86UB9 458 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 ELOA2Q8IYF1 753 aaPredicted RBP10.9□□□□□ -0.66
DDX41-216ENST00000513562 PYROXD2Q8N2H3 581 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 TSEN2Q8NCE0 465 aaKnown RBP10.9□□□□□ -0.66
DDX41-216ENST00000513562 JOSD2Q8TAC2 188 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 GPT2Q8TD30 523 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 FAM172AQ8WUF8 416 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 CPA5Q8WXQ8 436 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 SPOCK2Q92563 424 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 DTD2Q96FN9 168 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 ULBP3Q9BZM4 244 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 LRRC19Q9H756 370 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 CASS4Q9NQ75 786 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 KCTD5Q9NXV2 234 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 B4GALT6Q9UBX8 382 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 PLEKHM1Q9Y4G2 1056 aa10.9□□□□□ -0.66
DDX41-216ENST00000513562 CDC14CA4D256 554 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 DNAJB5O75953 348 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 HEXIM1O94992 359 aaKnown RBP10.89□□□□□ -0.67
DDX41-216ENST00000513562 MAP3K6O95382 1288 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 RECKO95980 971 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 ANKRD34CP0C6C1 535 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 ZNF28P17035 718 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 PPM1FP49593 454 aaPredicted RBP10.89□□□□□ -0.67
DDX41-216ENST00000513562 SEMA5AQ13591 1074 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 NADK2Q4G0N4 442 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 DPY19L2P1Q6NXN4 242 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 C6orf15Q6UXA7 325 aaPredicted RBP10.89□□□□□ -0.67
DDX41-216ENST00000513562 SLFN11Q7Z7L1 901 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms