RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 DLG2Q15700 870 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 SPATS1Q496A3 300 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 STYK1Q6J9G0 422 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 OR52E6Q96RD3 313 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 ZNF347Q96SE7 839 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 PI4K2AQ9BTU6 479 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 ZNF471Q9BX82 626 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 METTL8Q9H825 291 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 RBM47A0AV96 593 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 ELOVL7A1L3X0 281 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 PEX11AO75192 247 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 KAT7O95251 611 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 ASLP04424 464 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 PET100P0DJ07 73 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 PSKH1P11801 424 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 ANXA8P13928 327 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 SCNN1BP51168 640 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 TEAD4Q15561 434 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 DSELQ8IZU8 1212 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 METTL25Q8N6Q8 603 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 CIDECQ96AQ7 238 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 RNF31Q96EP0 1072 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 EBF2Q9HAK2 575 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 C3orf14Q9HBI5 128 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 IFT46Q9NQC8 304 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 NUDT15Q9NV35 164 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 M0R233 179 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 ACOX3O15254 700 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 NUDT14O95848 222 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 TSPAN5P62079 268 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 IRAK1BP1Q5VVH5 260 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 APTXQ7Z2E3 356 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 SATL1Q86VE3 508 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 DPF3Q92784 378 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 ACSF2Q96CM8 615 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 DMRTB1Q96MA1 342 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 SEMA3GQ9NS98 782 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 PDP1Q9P0J1 537 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 METP08581 1390 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 BIVM-ERCC5R4GMW8 1640 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 SLC25A12O75746 678 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 FSHRP23945 695 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 LCN1P31025 176 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 RGS6P49758 472 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 ELAVL2Q12926 359 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 UBAP2LQ14157 1087 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 PRKD1Q15139 912 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 PFKFB4Q16877 469 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 ZNF484Q5JVG2 852 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 CBR4Q8N4T8 237 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 SLC38A4Q969I6 547 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 NSMCE3Q96MG7 304 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 C1orf109Q9NX04 203 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 CALML5Q9NZT1 146 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 SUCOQ9UBS9 1254 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 MRTO4Q9UKD2 239 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 USP6P35125 1406 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 RIIAD1A6NNX1 92 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 CPNE3O75131 537 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 SLC25A27O95847 323 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 CSN2P05814 226 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 PPP3R1P63098 170 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 TDGQ13569 410 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 KCNT2Q6UVM3 1135 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 ZNF720Q7Z2F6 126 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 FAM131BQ86XD5 332 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 CHERPQ8IWX8 916 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 ING5Q8WYH8 240 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 LPGAT1Q92604 370 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 MRPS31Q92665 395 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 MED8Q96G25 268 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 CNDP2Q96KP4 475 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 KCTD7Q96MP8 289 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 POLR1EQ9GZS1 481 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 COMMD4Q9H0A8 199 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 SEMA4BQ9NPR2 832 aaPredicted RBP11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 DNAJB9Q9UBS3 223 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 FSCN2O14926 492 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 HOXA2O43364 376 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 LIASO43766 372 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 OR1I1O60431 355 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 GJB6O95452 261 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 LTFP02788 710 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 UROSP10746 265 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 ADAM15Q13444 863 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 TIGD4Q8IY51 512 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 CPNE9Q8IYJ1 553 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 SDR16C5Q8N3Y7 309 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 CCDC54Q8NEL0 328 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 CHST13Q8NET6 341 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 PREBQ9HCU5 417 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 ZMYM5Q9UJ78 669 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 USP20Q9Y2K6 914 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 LRRC42Q9Y546 428 aa11.21□□□□□ -0.61
LIMCH1-208ENST00000508501 A0A0J9YYE9 177 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 TRIM64A6NGJ6 449 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 TRIM64BA6NI03 449 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 B8ZZF3 427 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 RP2O75695 350 aa11.21□□□□□ -0.62
LIMCH1-208ENST00000508501 IPO13O94829 963 aaKnown RBP11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms