RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 TTC7BQ86TV6 843 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 VPS36Q86VN1 386 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 TMPRSS12Q86WS5 348 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 GATAD2AQ86YP4 633 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 CACTIN-AS1Q8N1I8 211 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 SLC25A45Q8N413 288 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 LZTR1Q8N653 840 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 EID2Q8N6I1 236 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 ARFGAP1Q8N6T3 406 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 CNDP2Q96KP4 475 aaKnown RBP8.09□□□□□ -1.11
SCN1A-207ENST00000507401 BMFQ96LC9 184 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 ZNF641Q96N77 438 aaPredicted RBP8.09□□□□□ -1.11
SCN1A-207ENST00000507401 TM6SF2Q9BZW4 377 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 ZDHHC6Q9H6R6 413 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 GPR27Q9NS67 375 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 DKK4Q9UBT3 224 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 GUCA1BQ9UMX6 200 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 AP4E1Q9UPM8 1137 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 ACTL7AQ9Y615 435 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 PLXNB3Q9ULL4 1909 aa8.09□□□□□ -1.11
SCN1A-207ENST00000507401 CHD6Q8TD26 2715 aa8.09□□□□□ -1.12
SCN1A-207ENST00000507401 SPTY2D1-AS1A0A0U1RR47 76 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 NEMP2A6NFY4 417 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 ARHGAP42A6NI28 874 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 ANKRD65E5RJM6 399 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 E7EVH7 732 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 EEF2KO00418 725 aaKnown RBP8.08□□□□□ -1.12
SCN1A-207ENST00000507401 NEMP1O14524 444 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 FPGTO14772 594 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 PJA2O43164 708 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 DAPK3O43293 454 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 PRAMEF11O60813 436 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 LRCH4O75427 683 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 KRT37O76014 449 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 TMCC1O94876 653 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 LCA5LO95447 670 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 ATP6V1G2O95670 118 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 IL2RAP01589 272 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 SERPING1P05155 500 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 UGT2B4P06133 528 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 MYBL2P10244 700 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 DGKAP23743 735 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 PAX7P23759 505 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 ACP1P24666 158 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 MIPP30301 263 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 RABIFP47224 123 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 RHOAP61586 193 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 YPEL5P62699 121 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 IL10RBQ08334 325 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 PIGHQ14442 188 aaPredicted RBP8.08□□□□□ -1.12
SCN1A-207ENST00000507401 RFTN1Q14699 578 aaPredicted RBP8.08□□□□□ -1.12
SCN1A-207ENST00000507401 LBRQ14739 615 aaKnown RBP8.08□□□□□ -1.12
SCN1A-207ENST00000507401 TTMPQ5BVD1 217 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 TMCO4Q5TGY1 634 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 AFMIDQ63HM1 303 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 KYAT3Q6YP21 454 aaKnown RBP8.08□□□□□ -1.12
SCN1A-207ENST00000507401 GCNT7Q6ZNI0 430 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 Q6ZSR6 202 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 RFX8Q6ZV50 586 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 ZNF354CQ86Y25 554 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 DNAAF5Q86Y56 855 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 CREG2Q8IUH2 290 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 CCDC197Q8NCU1 140 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 ACRBPQ8NEB7 543 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 DENND6BQ8NEG7 585 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 KLK6Q92876 244 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 SPDL1Q96EA4 605 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 HMCESQ96FZ2 354 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 CALR3Q96L12 384 aaKnown RBP8.08□□□□□ -1.12
SCN1A-207ENST00000507401 KLHL32Q96NJ5 620 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 KLF6Q99612 283 aaPredicted RBP8.08□□□□□ -1.12
SCN1A-207ENST00000507401 SLC39A8Q9C0K1 460 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 KLC2Q9H0B6 622 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 CENPHQ9H3R5 247 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 SUV39H2Q9H5I1 410 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 DHX35Q9H5Z1 703 aaKnown RBP8.08□□□□□ -1.12
SCN1A-207ENST00000507401 CCDC134Q9H6E4 229 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 PDFQ9HBH1 243 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 PRM3Q9NNZ6 103 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 UBA2Q9UBT2 640 aaPredicted RBP8.08□□□□□ -1.12
SCN1A-207ENST00000507401 PCSK1NQ9UHG2 260 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 KNTC1P50748 2209 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 ARID1BQ8NFD5 2236 aaPredicted RBP8.08□□□□□ -1.12
SCN1A-207ENST00000507401 IGF2RP11717 2491 aa8.08□□□□□ -1.12
SCN1A-207ENST00000507401 ZZEF1O43149 2961 aa8.07□□□□□ -1.12
SCN1A-207ENST00000507401 DMXL2Q8TDJ6 3036 aa8.07□□□□□ -1.12
SCN1A-207ENST00000507401 TSPAN11A1L157 253 aa8.07□□□□□ -1.12
SCN1A-207ENST00000507401 CFAP69A5D8W1 941 aa8.07□□□□□ -1.12
SCN1A-207ENST00000507401 POM121BA6NF01 834 aa8.07□□□□□ -1.12
SCN1A-207ENST00000507401 IGLON5A6NGN9 336 aa8.07□□□□□ -1.12
SCN1A-207ENST00000507401 CCT8L1PA6NM43 557 aa8.07□□□□□ -1.12
SCN1A-207ENST00000507401 J3KR12 359 aa8.07□□□□□ -1.12
SCN1A-207ENST00000507401 SCAMP1O15126 338 aa8.07□□□□□ -1.12
SCN1A-207ENST00000507401 RFPL3O75679 317 aa8.07□□□□□ -1.12
SCN1A-207ENST00000507401 PIAS2O75928 621 aa8.07□□□□□ -1.12
SCN1A-207ENST00000507401 SMNDC1O75940 238 aaKnown RBP eCLIP8.07□□□□□ -1.12
SCN1A-207ENST00000507401 ATP5HO75947 161 aa8.07□□□□□ -1.12
SCN1A-207ENST00000507401 CSF2P04141 144 aa8.07□□□□□ -1.12
SCN1A-207ENST00000507401 ATP1A1P05023 1023 aaKnown RBP8.07□□□□□ -1.12
SCN1A-207ENST00000507401 GSTA2P09210 222 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms