RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 KCNK4Q9NYG8 393 aa21.01■□□□□ 0.95
SQSTM1-210ENST00000506042 PCDHGA3Q9Y5H0 932 aa21.01■□□□□ 0.95
SQSTM1-210ENST00000506042 UNC13CQ8NB66 2214 aa21.01■□□□□ 0.95
SQSTM1-210ENST00000506042 ASH1LQ9NR48 2969 aaKnown RBP21■□□□□ 0.95
SQSTM1-210ENST00000506042 LRRC10BA6NIK2 292 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 HTRA2O43464 458 aaPredicted RBP21■□□□□ 0.95
SQSTM1-210ENST00000506042 ECEL1O95672 775 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 GZMAP12544 262 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 MIPP30301 263 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 EPHB1P54762 984 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 OR1D5P58170 312 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 CDK3Q00526 305 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 CNGA3Q16281 694 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 ASIC2Q16515 512 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 DCAF12Q5T6F0 453 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 VASH2Q86V25 355 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 EXD3Q8N9H8 876 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 SH3KBP1Q96B97 665 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 KCTD15Q96SI1 283 aaPredicted RBP21■□□□□ 0.95
SQSTM1-210ENST00000506042 LGR4Q9BXB1 951 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 SLC25A18Q9H1K4 315 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 GEMIN8Q9NWZ8 242 aaKnown RBP21■□□□□ 0.95
SQSTM1-210ENST00000506042 SUFUQ9UMX1 484 aa21■□□□□ 0.95
SQSTM1-210ENST00000506042 TMEM191CA6NGB0 347 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 C9orf172C9J069 976 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 DUX1O43812 170 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 FGF1P05230 155 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 FAM87AP0C7U9 286 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 ZNF30P17039 623 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 CES1P23141 567 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 PCK1P35558 622 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 ACTR1BP42025 376 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 MMP13P45452 471 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 LIMK2P53671 638 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 MAZP56270 477 aaKnown RBP20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 ACTR1AP61163 376 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 DPTQ07507 201 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 C16orf72Q14CZ0 275 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 TBR1Q16650 682 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 LINC00303Q3SY05 128 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 ZNF574Q6ZN55 896 aaPredicted RBP20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 ARHGAP12Q8IWW6 846 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 ZNF653Q96CK0 615 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 SCRN2Q96FV2 425 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 CCDC74BQ96LY2 380 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 OR2M4Q96R27 311 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 ZPBPQ9BS86 351 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 FRMD8Q9BZ67 464 aaPredicted RBP20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 SPATS2LQ9NUQ6 558 aaKnown RBP20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 FOXJ2Q9P0K8 574 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 CNOT8Q9UFF9 292 aaKnown RBP20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 PCDHGC4Q9Y5F7 938 aa20.99■□□□□ 0.95
SQSTM1-210ENST00000506042 IGHV5-10-1A0A0J9YXX1 117 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 ZNF891A8MT65 544 aaPredicted RBP20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 AGRPO00253 132 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 CASC3O15234 703 aaKnown RBP20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 CEACAM5P06731 702 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 ETV5P41161 510 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 CCR10P46092 362 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 OGDHQ02218 1023 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 SLC10A7Q0GE19 358 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 SQSTM1Q13501 440 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 C17orf82Q86X59 251 aaPredicted RBP20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 GALNT13Q8IUC8 556 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 RAVER1Q8IY67 606 aaKnown RBP20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 CCL4L1Q8NHW4 92 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 SLC38A3Q99624 504 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 MGME1Q9BQP7 344 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 SLC39A1Q9NY26 324 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 CWC15Q9P013 229 aaKnown RBP20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 TUBD1Q9UJT1 453 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 FLNBO75369 2602 aaKnown RBP20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 ATMQ13315 3056 aa20.98■□□□□ 0.95
SQSTM1-210ENST00000506042 SETXQ7Z333 2677 aaKnown RBP20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 B4GAT1O43505 415 aa20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 FTLP02792 175 aaPredicted RBP20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 ETV3P41162 512 aa20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 CTBSQ01459 385 aa20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 MC1RQ01726 317 aa20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 PIGHQ14442 188 aaPredicted RBP20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 CA9Q16790 459 aa20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 TIGD7Q6NT04 549 aaPredicted RBP20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 FAM129CQ86XR2 697 aa20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 NRSN1Q8IZ57 195 aa20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 NPWQ8N729 165 aa20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 AP2M1Q96CW1 435 aa20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 TRIT1Q9H3H1 467 aaKnown RBP20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 SLC17A4Q9Y2C5 497 aa20.97■□□□□ 0.95
SQSTM1-210ENST00000506042 B4E171 279 aa20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 CD1CP29017 333 aa20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 ADCY8P40145 1251 aa20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 TSPAN7P41732 249 aa20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 ITKQ08881 620 aa20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 DPYSQ14117 519 aa20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 DPYSL2Q16555 572 aa20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 TMEM71Q6P5X7 295 aa20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 DOK6Q6PKX4 331 aa20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 ZNF765Q7L2R6 523 aa20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 CACNA2D3Q8IZS8 1091 aa20.96■□□□□ 0.95
SQSTM1-210ENST00000506042 NUDT22Q9BRQ3 303 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms