RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 VAV1P15498 845 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 AOC1P19801 751 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 ATP6V1E1P36543 226 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 CXCR3P49682 368 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 RPL38P63173 70 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 TOP3AQ13472 1001 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 TP53BP2Q13625 1128 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 SLC9B1Q4ZJI4 515 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 MBLAC2Q68D91 279 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 C8orf59Q8N0T1 100 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 ATL1Q8WXF7 558 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 PSMG2Q969U7 264 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 PLD4Q96BZ4 506 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 TM6SF2Q9BZW4 377 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 INTS10Q9NVR2 710 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 MAGEL2Q9UJ55 1249 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 RAI2Q9Y5P3 530 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 A8MX80 341 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 QSOX1O00391 747 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 HOXB6P17509 224 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 CORO1AP31146 461 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 TAS2R39P59534 338 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 CACNG1Q06432 222 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 LCP2Q13094 533 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 ZNF460Q14592 562 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 STARD3Q14849 445 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 DLG2Q15700 870 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 SDE2Q6IQ49 451 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 MAGEE2Q8TD90 523 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 MTFMTQ96DP5 389 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 SMOC2Q9H3U7 446 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 MIEF1Q9NQG6 463 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 ACSS2Q9NR19 701 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 NUDT4Q9NZJ9 180 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 TMCC3Q9ULS5 477 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 ZMYND8Q9ULU4 1186 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 HLA-DQB2P05538 268 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 OR1D2P34982 312 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 ACOX1Q15067 660 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 CCL14Q16627 93 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 ZDHHC14Q8IZN3 488 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 OR2T34Q8NGX1 318 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 OR2T3Q8NH03 318 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 GLMNQ92990 594 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 SKA1Q96BD8 255 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 PIWIL1Q96J94 861 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 FEM1CQ96JP0 617 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 ZMAT2Q96NC0 199 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 HERPUD2Q9BSE4 406 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 C1orf50Q9BV19 199 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 ADAMTS10Q9H324 1103 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 POMPQ9Y244 141 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 TPRKBQ9Y3C4 175 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 MFHAS1Q9Y4C4 1052 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 PCDHB9Q9Y5E1 797 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 INSIG1O15503 277 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 ANXA6P08133 673 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 ZDHHC20Q5W0Z9 365 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 SYTL1Q8IYJ3 562 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 CPSF7Q8N684 471 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 OSBPL6Q9BZF3 934 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 RAD21L1Q9H4I0 556 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 MRM3Q9HC36 420 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 SIRPGQ9P1W8 387 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 ZFP37Q9Y6Q3 630 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 COX7A2P14406 83 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 CTPS1P17812 591 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 ACSM2AQ08AH3 577 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 ACSM2BQ68CK6 577 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 MAMDC4Q6UXC1 1216 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 DENND1AQ8TEH3 1009 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 TBCDQ9BTW9 1192 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 DDX18Q9NVP1 670 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 SH3BP4Q9P0V3 963 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 ENOPH1Q9UHY7 261 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 PRMT5O14744 637 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 RNASEH1O60930 286 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 XYLBO75191 536 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 RFPL1O75677 317 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 PGM3O95394 542 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 CATP04040 527 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 DLDP09622 509 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 DEFA1P59665 94 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 DEFA3P59666 94 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 PURAQ00577 322 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 CLCQ05315 142 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 RUNX1T1Q06455 604 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 TAF1AQ15573 450 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 TTC23Q5W5X9 447 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 FUT10Q6P4F1 479 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 FAM151BQ6UXP7 276 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 CERS6Q6ZMG9 384 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 SLC2A13Q96QE2 648 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 GPR22Q99680 433 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 SMOQ99835 787 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 KIAA1522Q9P206 1035 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 A0A1B0GVM2 712 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 TCAF2A6NFQ2 919 aa10.75□□□□□ -0.69
LIMCH1-205ENST00000503057 FAM20BO75063 409 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms