RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ACRP10323 421 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 IDSP22304 550 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 RBM44Q6ZP01 1051 aaKnown RBP13.15□□□□□ -0.3
PTPRF-215ENST00000496447 ACMSDQ8TDX5 336 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 CLP1Q92989 425 aaKnown RBP13.15□□□□□ -0.3
PTPRF-215ENST00000496447 BORCS5Q969J3 196 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 ACTL7BQ9Y614 415 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 ATG13O75143 517 aa13.15□□□□□ -0.31
PTPRF-215ENST00000496447 RHOQP17081 205 aa13.15□□□□□ -0.31
PTPRF-215ENST00000496447 COX10Q12887 443 aa13.15□□□□□ -0.31
PTPRF-215ENST00000496447 NR1D2Q14995 579 aa13.15□□□□□ -0.31
PTPRF-215ENST00000496447 CAPN13Q6MZZ7 669 aaPredicted RBP13.15□□□□□ -0.31
PTPRF-215ENST00000496447 TAPT1Q6NXT6 567 aa13.15□□□□□ -0.31
PTPRF-215ENST00000496447 GCNT7Q6ZNI0 430 aa13.15□□□□□ -0.31
PTPRF-215ENST00000496447 PIWIL4Q7Z3Z4 852 aaKnown RBP13.15□□□□□ -0.31
PTPRF-215ENST00000496447 CKAP2Q8WWK9 683 aa13.15□□□□□ -0.31
PTPRF-215ENST00000496447 TEKT5Q96M29 485 aa13.15□□□□□ -0.31
PTPRF-215ENST00000496447 CPXM1Q96SM3 734 aa13.15□□□□□ -0.31
PTPRF-215ENST00000496447 C11orf84Q9BUA3 381 aaPredicted RBP13.15□□□□□ -0.31
PTPRF-215ENST00000496447 ACE2Q9BYF1 805 aaPredicted RBP13.15□□□□□ -0.31
PTPRF-215ENST00000496447 SEZ6LQ9BYH1 1024 aa13.15□□□□□ -0.31
PTPRF-215ENST00000496447 VWA7Q9Y334 891 aa13.15□□□□□ -0.31
PTPRF-215ENST00000496447 PIPSLA2A3N6 862 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 EOMESO95936 686 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 RPL4P36578 427 aaKnown RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 ZNF280AP59817 542 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 INO80DQ53TQ3 878 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 CHSY3Q70JA7 882 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 PRELID2Q8N945 189 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 ABCG8Q9H221 673 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 XPR1Q9UBH6 696 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 PNMA8CA0A1B0GUJ8 204 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 RASGRP1O95267 797 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 ABHD2P08910 425 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 CRHR2Q13324 411 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 LSM12Q3MHD2 195 aaKnown RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 VARS2Q5ST30 1063 aaKnown RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 ARMC4Q5T2S8 1044 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 EIF3MQ7L2H7 374 aaKnown RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 RDH11Q8TC12 318 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 C19orf60Q96EN9 201 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 REXO5Q96IC2 774 aaKnown RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 SNX27Q96L92 541 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 GMEB1Q9Y692 573 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 A0A1W2PQ67 120 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 MATN2O00339 956 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 IDH3BO43837 385 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 CDK14O94921 469 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 TRIM32Q13049 653 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 SF1Q15637 639 aaKnown RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 ARMC8Q8IUR7 673 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 MBOAT7Q96N66 472 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 CSPG4P5Q96PW8 444 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 TBC1D10AQ9BXI6 508 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 MAT2BQ9NZL9 334 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 KLRG2A4D1S0 409 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 DPPA5A6NC42 116 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 RPP40O75818 363 aaKnown RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 SNRPB2P08579 225 aaKnown RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 SLC5A9Q2M3M2 681 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 EXOC3L1Q86VI1 746 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 C1orf127Q8N9H9 656 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 DQX1Q8TE96 717 aaKnown RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 KREMEN1Q96MU8 473 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 SEMA6AQ9H2E6 1030 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 SNX15Q9NRS6 342 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 ZNF180Q9UJW8 692 aa13.14□□□□□ -0.31
PTPRF-215ENST00000496447 ZFP37Q9Y6Q3 630 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-215ENST00000496447 LRRC72A6NJI9 287 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 C4BPAP04003 597 aaKnown RBP13.13□□□□□ -0.31
PTPRF-215ENST00000496447 RHBDF2Q6PJF5 856 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 LINGO4Q6UY18 593 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 GPR180Q86V85 440 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 GALNT13Q8IUC8 556 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 CACTIN-AS1Q8N1I8 211 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 FNIP1Q8TF40 1166 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 ART4Q93070 314 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 TNKS2Q9H2K2 1166 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 IKZF4Q9H2S9 585 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 DHX33Q9H6R0 707 aaKnown RBP13.13□□□□□ -0.31
PTPRF-215ENST00000496447 CARD8Q9Y2G2 431 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 MTF2Q9Y483 593 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-215ENST00000496447 KLHL33A6NCF5 533 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 GPR25O00155 361 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 SSR2P43308 183 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 GSTM5P46439 218 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 EML3Q32P44 896 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 TEX44Q53QW1 395 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 PACS1Q6VY07 963 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 ANKS1BQ7Z6G8 1248 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 IFNL1Q8IU54 200 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 DHRSXQ8N5I4 330 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 DBF4BQ8NFT6 615 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 OR4K2Q8NGD2 314 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 KCTD15Q96SI1 283 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-215ENST00000496447 RCOR3Q9P2K3 495 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-215ENST00000496447 MRC1P22897 1456 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 H3BM21 787 aa13.13□□□□□ -0.31
PTPRF-215ENST00000496447 TSC22D2O75157 780 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms