RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 HOXB3P14651 431 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-214ENST00000496043 PNLIPP16233 465 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 ZNF30P17039 623 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 GPR1P46091 355 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 RPL26P61254 145 aaKnown RBP12.72□□□□□ -0.37
PTPRF-214ENST00000496043 CDK3Q00526 305 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 GBE1Q04446 702 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 PEX6Q13608 980 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 BROXQ5VW32 411 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 ALG1LQ6GMV1 187 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 FOXR1Q6PIV2 292 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 ARL14Q8N4G2 192 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 Q8N9G6 341 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-214ENST00000496043 CCL4L1Q8NHW4 92 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 ARRDC2Q8TBH0 407 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 KIAA1524Q8TCG1 905 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 GPBAR1Q8TDU6 330 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 CRELD1Q96HD1 420 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 NAF1Q96HR8 494 aaKnown RBP12.72□□□□□ -0.37
PTPRF-214ENST00000496043 HIC2Q96JB3 615 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 ANP32EQ9BTT0 268 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 GSDMCQ9BYG8 508 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 FRMD8Q9BZ67 464 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-214ENST00000496043 ABCG8Q9H221 673 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 PRORYQ9H606 182 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 TRNAU1APQ9NX07 287 aaKnown RBP12.72□□□□□ -0.37
PTPRF-214ENST00000496043 DTLQ9NZJ0 730 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 LRIT1Q9P2V4 623 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 RABGEF1Q9UJ41 708 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 APPL1Q9UKG1 709 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 RPL26L1Q9UNX3 145 aaKnown RBP12.72□□□□□ -0.37
PTPRF-214ENST00000496043 TTLL3Q9Y4R7 772 aa12.72□□□□□ -0.37
PTPRF-214ENST00000496043 FREM2Q5SZK8 3169 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 CACNA1GO43497 2377 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 LRRK1Q38SD2 2015 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 CCDC187A0A096LP49 1063 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 LRRD1A4D1F6 860 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 ZNF487B1APH4 448 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 AKR1B15C9JRZ8 316 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-214ENST00000496043 NOBOXO60393 691 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 MFAP3LO75121 409 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 FUCA1P04066 466 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 RPLP0P05388 317 aaKnown RBP12.71□□□□□ -0.37
PTPRF-214ENST00000496043 PYGLP06737 847 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 ZFXP17010 805 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-214ENST00000496043 SLC1A1P43005 524 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 GNPDA1P46926 289 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 NIPAL4Q0D2K0 466 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 ILF3Q12906 894 aaKnown RBP eCLIP12.71□□□□□ -0.37
PTPRF-214ENST00000496043 C14orf28Q4W4Y0 310 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 ODF2Q5BJF6 829 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 LRRC38Q5VT99 294 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 LRRC66Q68CR7 880 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 ADAMTSL4Q6UY14 1074 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 ZNF765Q7L2R6 523 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 VSIG1Q86XK7 387 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 CNGA4Q8IV77 575 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 SPACA3Q8IXA5 215 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 RAVER1Q8IY67 606 aaKnown RBP12.71□□□□□ -0.37
PTPRF-214ENST00000496043 NRSN1Q8IZ57 195 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 RNF214Q8ND24 703 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-214ENST00000496043 LRRN4Q8WUT4 740 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 AP2M1Q96CW1 435 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 HDAC11Q96DB2 347 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 CCDC97Q96F63 343 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-214ENST00000496043 PRR11Q96HE9 360 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-214ENST00000496043 TMEM74Q96NL1 305 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 TDRD1Q9BXT4 1180 aaKnown RBP12.71□□□□□ -0.37
PTPRF-214ENST00000496043 DPH1Q9BZG8 443 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 STRADBQ9C0K7 418 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 SUDS3Q9H7L9 328 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-214ENST00000496043 PCDH9Q9HC56 1237 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 ASCL3Q9NQ33 180 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 SPATS2LQ9NUQ6 558 aaKnown RBP12.71□□□□□ -0.37
PTPRF-214ENST00000496043 SPTLC3Q9NUV7 552 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 CD84Q9UIB8 345 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 INTUQ9ULD6 942 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 SUFUQ9UMX1 484 aa12.71□□□□□ -0.37
PTPRF-214ENST00000496043 WDFY3Q8IZQ1 3526 aa12.71□□□□□ -0.38
PTPRF-214ENST00000496043 DSPP15924 2871 aaKnown RBP12.71□□□□□ -0.38
PTPRF-214ENST00000496043 A0A0U1RQS6 177 aa12.7□□□□□ -0.38
PTPRF-214ENST00000496043 A0A1W2PNU3 283 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-214ENST00000496043 A0A1W2PQM1 296 aa12.7□□□□□ -0.38
PTPRF-214ENST00000496043 EIF4E1BA6NMX2 242 aaKnown RBP12.7□□□□□ -0.38
PTPRF-214ENST00000496043 B4DGG1 531 aa12.7□□□□□ -0.38
PTPRF-214ENST00000496043 APOL1O14791 398 aa12.7□□□□□ -0.38
PTPRF-214ENST00000496043 CASC3O15234 703 aaKnown RBP12.7□□□□□ -0.38
PTPRF-214ENST00000496043 ZW10O43264 779 aa12.7□□□□□ -0.38
PTPRF-214ENST00000496043 NUDT21O43809 227 aaKnown RBP12.7□□□□□ -0.38
PTPRF-214ENST00000496043 MTA2O94776 668 aa12.7□□□□□ -0.38
PTPRF-214ENST00000496043 TNFSF15O95150 251 aa12.7□□□□□ -0.38
PTPRF-214ENST00000496043 CLDN7O95471 211 aa12.7□□□□□ -0.38
PTPRF-214ENST00000496043 PRLP01236 227 aa12.7□□□□□ -0.38
PTPRF-214ENST00000496043 FGF1P05230 155 aa12.7□□□□□ -0.38
PTPRF-214ENST00000496043 HLA-DQB2P05538 268 aa12.7□□□□□ -0.38
PTPRF-214ENST00000496043 IVLP07476 585 aa12.7□□□□□ -0.38
PTPRF-214ENST00000496043 MLLT3P42568 568 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-214ENST00000496043 POLD2P49005 469 aa12.7□□□□□ -0.38
PTPRF-214ENST00000496043 INHBCP55103 352 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms