RNA–Protein interactions for RNA: ENST00000494973.1

APTX-231, Transcript of aprataxin, human

TSL 4

Gene APTX, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-231	ENST00000494973	NUBP1	P53384	320 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	METAP1	P53582	386 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	CREB5	Q02930	508 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	MTM1	Q13496	603 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	THOC5	Q13769	683 aa	Known RBP	13.53	□□□□□ -0.24
APTX-231	ENST00000494973	ITGA9	Q13797	1035 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	FASTKD3	Q14CZ7	662 aa	Known RBP	13.53	□□□□□ -0.24
APTX-231	ENST00000494973	ACOX1	Q15067	660 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	AGER	Q15109	404 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	ZNF284	Q2VY69	593 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	FAM153C	Q494X1	144 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	USP39	Q53GS9	565 aa	Known RBP	13.53	□□□□□ -0.24
APTX-231	ENST00000494973	MRNIP	Q6NTE8	343 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	LIPI	Q6XZB0	460 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	C3orf62	Q6ZUJ4	267 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	NLRP8	Q86W28	1048 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	TRIM69	Q86WT6	500 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	OR4K2	Q8NGD2	314 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	UBLCP1	Q8WVY7	318 aa	Predicted RBP	13.53	□□□□□ -0.24
APTX-231	ENST00000494973	CERS2	Q96G23	380 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	CYTH2	Q99418	400 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	LRRC4C	Q9HCJ2	640 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	13.53	□□□□□ -0.24
APTX-231	ENST00000494973	SLC30A1	Q9Y6M5	507 aa		13.53	□□□□□ -0.24
APTX-231	ENST00000494973	TTC28	Q96AY4	2481 aa		13.52	□□□□□ -0.24
APTX-231	ENST00000494973	GLYATL1P3	A0A0U1RQE8	302 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	RIPK2	O43353	540 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	BANF1	O75531	89 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	ACSL3	O95573	720 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	SEMA4F	O95754	770 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	C6	P13671	934 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	EIF3B	P55884	814 aa	Known RBP	13.52	□□□□□ -0.25
APTX-231	ENST00000494973	PTS	Q03393	145 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	MGAT5	Q09328	741 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	SGCG	Q13326	291 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	STAT4	Q14765	748 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	KYNU	Q16719	465 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	GPR33	Q49SQ1	333 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	RNF187	Q5TA31	235 aa	Predicted RBP	13.52	□□□□□ -0.25
APTX-231	ENST00000494973	LYPLAL1	Q5VWZ2	237 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	CERS6	Q6ZMG9	384 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	KIAA0408	Q6ZU52	694 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	13.52	□□□□□ -0.25
APTX-231	ENST00000494973	TSPAN33	Q86UF1	283 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	HORMAD1	Q86X24	394 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	AGGF1	Q8N302	714 aa	eCLIP	13.52	□□□□□ -0.25
APTX-231	ENST00000494973	DENND6B	Q8NEG7	585 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	OR13J1	Q8NGT2	312 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	ULK4	Q96C45	1275 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	ERLEC1	Q96DZ1	483 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	NUS1	Q96E22	293 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	MFSD3	Q96ES6	412 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	DTD2	Q96FN9	168 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	DNAJC1	Q96KC8	554 aa	Known RBP	13.52	□□□□□ -0.25
APTX-231	ENST00000494973	COQ10A	Q96MF6	247 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	WDR83	Q9BRX9	315 aa	Known RBP	13.52	□□□□□ -0.25
APTX-231	ENST00000494973	ZSCAN5A	Q9BUG6	496 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	WRAP53	Q9BUR4	548 aa	Known RBP	13.52	□□□□□ -0.25
APTX-231	ENST00000494973	SEMA4A	Q9H3S1	761 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	FAM83D	Q9H4H8	585 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	C20orf96	Q9NUD7	363 aa	Predicted RBP	13.52	□□□□□ -0.25
APTX-231	ENST00000494973	ZFAT	Q9P243	1243 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	TXNDC16	Q9P2K2	825 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	FETUB	Q9UGM5	382 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	FBXO4	Q9UKT5	387 aa		13.52	□□□□□ -0.25
APTX-231	ENST00000494973	ZNF106	Q9H2Y7	1883 aa	Known RBP	13.52	□□□□□ -0.25
APTX-231	ENST00000494973	MYLK	Q15746	1914 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	TBC1D3D	A0A087WVF3	549 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	TBC1D3I	A0A087WXS9	549 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	TBC1D3E	A0A087X179	549 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	TBC1D3K	A0A087X1G2	549 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	ZCWPW2	A0A1B0GU75	182 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	TCRBV9S1A1T	A0A576	114 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	TBC1D3F	A6NER0	549 aa	Predicted RBP	13.51	□□□□□ -0.25
APTX-231	ENST00000494973	TBC1D3L	B9A6J9	549 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973		F8W8V4	182 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973		K7ESF4	209 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	SPINT1	O43278	529 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	NDUFS2	O75306	463 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	PDGFB	P01127	241 aa	Predicted RBP	13.51	□□□□□ -0.25
APTX-231	ENST00000494973	C1S	P09871	688 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	NUDT17	P0C025	328 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	TBC1D3H	P0C7X1	549 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	OGN	P20774	298 aa	Known RBP	13.51	□□□□□ -0.25
APTX-231	ENST00000494973	NMBR	P28336	390 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	TEAD1	P28347	426 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	CCR5	P51681	352 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	TAS2R38	P59533	333 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	CACNG1	Q06432	222 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	DPT	Q07507	201 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	SETMAR	Q53H47	684 aa	Predicted RBP	13.51	□□□□□ -0.25
APTX-231	ENST00000494973	FASTKD1	Q53R41	847 aa	Known RBP	13.51	□□□□□ -0.25
APTX-231	ENST00000494973	LRRC73	Q5JTD7	316 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	13.51	□□□□□ -0.25
APTX-231	ENST00000494973	BEND6	Q5SZJ8	279 aa	Predicted RBP	13.51	□□□□□ -0.25
APTX-231	ENST00000494973	TBC1D3G	Q6DHY5	549 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	TBC1D3C	Q6IPX1	549 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	ESRP1	Q6NXG1	681 aa	Known RBP	13.51	□□□□□ -0.25
APTX-231	ENST00000494973	TAOK1	Q7L7X3	1001 aa		13.51	□□□□□ -0.25
APTX-231	ENST00000494973	KCNMB4	Q86W47	210 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms