RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 FAM83EQ2M2I3 478 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 KIF19Q2TAC6 998 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 METTL21CQ5VZV1 264 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 NADSYN1Q6IA69 706 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 PGAM4Q8N0Y7 254 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 NCSTNQ92542 709 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 TMEM248Q9NWD8 314 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 TBC1D30Q9Y2I9 924 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 USP34Q70CQ2 3546 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 SUPT7LO94864 414 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 COL6A2P12110 1019 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 ATP5F1P24539 256 aaPredicted RBP16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 TRAF7Q6Q0C0 670 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 TAS1R1Q7RTX1 841 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 ZNF786Q8N393 782 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 FAM47BQ8NA70 645 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 TSPAN14Q8NG11 270 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 C1orf74Q96LT6 269 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 BTBD9Q96Q07 612 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 KCNA7Q96RP8 456 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 FBXO44Q9H4M3 255 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 NR5A2O00482 541 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 FBP2O00757 339 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 SIX3O95343 332 aaPredicted RBP16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 MYCP01106 439 aaPredicted RBP16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 ATXN1LP0C7T5 689 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 NDST2P52849 883 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 FUT11Q495W5 492 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 TMEM102Q8N9M5 508 aaPredicted RBP16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 DRAXINQ8NBI3 349 aaPredicted RBP16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 OR7D4Q8NG98 312 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 MRM3Q9HC36 420 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 VWA7Q9Y334 891 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 PCDHGA7Q9Y5G6 932 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 A0A087X1B8 175 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 SMIM31A0A1B0GVY4 71 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 UBFD1O14562 309 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 ACOT8O14734 319 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 LTA4HP09960 611 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 CDK4P11802 303 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 RPL17P18621 184 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 APLP1P51693 650 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 NFE2Q16621 373 aaPredicted RBP16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 REP15Q6BDI9 236 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 PRSS55Q6UWB4 352 aaPredicted RBP16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 CUZD1Q86UP6 607 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 ATP6V0D2Q8N8Y2 350 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 PTCD2Q8WV60 388 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 CANT1Q8WVQ1 401 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 PRKD2Q9BZL6 878 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 ZNF385DQ9H6B1 395 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 ATP13A1Q9HD20 1204 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 BTRCQ9Y297 605 aa16.52■□□□□ 0.24
CCDC88B-210ENST00000494566 SOCS2O14508 198 aa16.52■□□□□ 0.23
CCDC88B-210ENST00000494566 LDB2O43679 373 aa16.52■□□□□ 0.23
CCDC88B-210ENST00000494566 IPO13O94829 963 aaKnown RBP16.52■□□□□ 0.23
CCDC88B-210ENST00000494566 VNN2O95498 520 aa16.52■□□□□ 0.23
CCDC88B-210ENST00000494566 LEPRP48357 1165 aaKnown RBP16.52■□□□□ 0.23
CCDC88B-210ENST00000494566 ECT2LQ008S8 904 aa16.52■□□□□ 0.23
CCDC88B-210ENST00000494566 RTP2Q5QGT7 225 aa16.52■□□□□ 0.23
CCDC88B-210ENST00000494566 MSANTD2Q6P1R3 559 aa16.52■□□□□ 0.23
CCDC88B-210ENST00000494566 SPPL2CQ8IUH8 684 aa16.52■□□□□ 0.23
CCDC88B-210ENST00000494566 PTERQ96BW5 349 aa16.52■□□□□ 0.23
CCDC88B-210ENST00000494566 BTN2A3PQ96KV6 586 aa16.52■□□□□ 0.23
CCDC88B-210ENST00000494566 NSMCE3Q96MG7 304 aa16.52■□□□□ 0.23
CCDC88B-210ENST00000494566 ARHGAP10A1A4S6 786 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 WASH4PA8MWX3 477 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 S1PR4O95977 384 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 GOT2P00505 430 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 PRDX6P30041 224 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 SREBF2Q12772 1141 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 LPCAT2Q7L5N7 544 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 LGI2Q8N0V4 545 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 RIN3Q8TB24 985 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 NUDT8Q8WV74 236 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 SLCO4A1Q96BD0 722 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 C8orf48Q96LL4 319 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 C3orf30Q96M34 536 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 SPON2Q9BUD6 331 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 EVLQ9UI08 416 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 PRPF19Q9UMS4 504 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 PSMD12O00232 456 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 UBDO15205 165 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 DENRO43583 198 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 TLR5O60602 858 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 BCAS2O75934 225 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 STAMBPO95630 424 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 NCK1P16333 377 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 ZNF26P17031 533 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 HTR7P34969 479 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 VPS26BQ4G0F5 336 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 AGAP9Q5VTM2 703 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 ZNF549Q6P9A3 640 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 PIWIL4Q7Z3Z4 852 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 ABI1Q8IZP0 508 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 PCSK9Q8NBP7 692 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 ESAMQ96AP7 390 aa16.51■□□□□ 0.23
CCDC88B-210ENST00000494566 CNDP1Q96KN2 507 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms