RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 AGO3Q9H9G7 860 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 PIGVQ9NUD9 493 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 ADAMTS6Q9UKP5 1117 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 ASB3Q9Y575 518 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 IDH3BO43837 385 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 TBL1XO60907 577 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 AP2A1O95782 977 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 CCT8P50990 548 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 INSCQ1MX18 579 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 ARMCX4Q5H9R4 360 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 SLCO6A1Q86UG4 719 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 EID3Q8N140 333 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 CRYBG2Q8N1P7 616 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 PGBD3Q8N328 593 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 FBXO30Q8TB52 745 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 MLPHQ9BV36 600 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 FZD10Q9ULW2 581 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 TPRKBQ9Y3C4 175 aa16.31■□□□□ 0.2
CCDC88B-209ENST00000494080 TJP1Q07157 1748 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 RBM47A0AV96 593 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 OR6C75A6NL08 312 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 E9PAM4 449 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 STX16-NPEPL1H3BU86 382 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 KLF11O14901 512 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 SYNCRIPO60506 623 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 TSC22D2O75157 780 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 PTPN3P26045 913 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 IVDP26440 423 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 PLEKHG4Q58EX7 1191 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 CIR1Q86X95 450 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 SPPL2CQ8IUH8 684 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 SLC35F5Q8WV83 523 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 TAMM41Q96BW9 452 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 B3GALT6Q96L58 329 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 C16orf70Q9BSU1 422 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 CHID1Q9BWS9 393 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 RHOJQ9H4E5 214 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 RIBC2Q9H4K1 309 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 A0A087X1B8 175 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 TMEM88BA6NKF7 163 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 SERPINI2O75830 405 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 F2P00734 622 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 TFPTP0C1Z6 253 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 EDNRBP24530 442 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 IL2P60568 153 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 SPDYE7PQ495Y7 208 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 PABPC1LQ4VXU2 614 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 TMEM198Q66K66 360 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 SPESP1Q6UW49 350 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 SCIMPQ6UWF3 145 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 VPS33AQ96AX1 596 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 PKP2Q99959 881 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 HIPK3Q9H422 1215 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 ZNF556Q9HAH1 456 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 ZNF358Q9NW07 568 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 USE1Q9NZ43 259 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 SLC17A6Q9P2U8 582 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 GMEB1Q9Y692 573 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 IGSF6O95976 241 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 CTPS1P17812 591 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 PRDX6P30041 224 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 CLCN5P51795 746 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 MSLNQ13421 630 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 GRB14Q14449 540 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 PKN3Q6P5Z2 889 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 CRTC3Q6UUV7 619 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 C11orf96Q7Z7L8 435 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 UNC5BQ8IZJ1 945 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 SMYD1Q8NB12 490 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 HGH1Q9BTY7 390 aa16.3■□□□□ 0.2
CCDC88B-209ENST00000494080 SH3BGRLO75368 114 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 TOP3BO95985 862 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 RPL17P18621 184 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 MTA1Q13330 715 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 SLC9B1Q4ZJI4 515 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 PPM1LQ5SGD2 360 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 GPSM1Q86YR5 675 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 RELL1Q8IUW5 271 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 VPS37AQ8NEZ2 397 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 MTERF3Q96E29 417 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 BTN2A3PQ96KV6 586 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 CORO1BQ9BR76 489 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 FAM124BQ9H5Z6 455 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 ASB8Q9H765 288 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 HPS4Q9NQG7 708 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 CNTRLQ7Z7A1 2325 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 CHD4Q14839 1912 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 LOC100506127A0A0U1RQW1 187 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 MOXD2PA6NHM9 499 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 HK2P52789 917 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 GNA12Q03113 381 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 SLC18A2Q05940 514 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 CSTF3Q12996 717 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 VARS2Q5ST30 1063 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 IL23RQ5VWK5 629 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 GDF6Q6KF10 455 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 TAPT1Q6NXT6 567 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 MPP5Q8N3R9 675 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 S100ZQ8WXG8 99 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 RSPH1Q8WYR4 309 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms