RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 PRAMEP78395 509 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 PDE1BQ01064 536 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 DMWDQ09019 674 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 CBLBQ13191 982 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 LAMB3Q13751 1172 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 EFTUD2Q15029 972 aaKnown RBP eCLIP19.35■□□□□ 0.693e-8■■□□□ 13.7
USP39-218ENST00000493829 SKIDA1Q1XH10 827 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 TMEM52BQ4KMG9 183 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 BEND6Q5SZJ8 279 aaPredicted RBP19.35■□□□□ 0.69
USP39-218ENST00000493829 FAM151BQ6UXP7 276 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 NLRP9Q7RTR0 991 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 RASSF3Q86WH2 238 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 CCNJLQ8IV13 435 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 OR6P1Q8NGX9 317 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 FBF1Q8TES7 1133 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 KLK6Q92876 244 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 HDAC10Q969S8 669 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 TBATAQ96M53 351 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 ARFGAP3Q9NP61 516 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 ITM2CQ9NQX7 267 aa19.35■□□□□ 0.69
USP39-218ENST00000493829 C20orf96Q9NUD7 363 aaPredicted RBP19.35■□□□□ 0.69
USP39-218ENST00000493829 TTC28Q96AY4 2481 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 TBC1D3DA0A087WVF3 549 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 TBC1D3IA0A087WXS9 549 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 TBC1D3EA0A087X179 549 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 TBC1D3KA0A087X1G2 549 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 TCRBV9S1A1TA0A576 114 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 TBC1D3FA6NER0 549 aaPredicted RBP19.34■□□□□ 0.69
USP39-218ENST00000493829 TBC1D3LB9A6J9 549 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 SLC7A4O43246 635 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 TSPAN6O43657 245 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 AP1G1O43747 822 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 LZTS3O60299 673 aaPredicted RBP19.34■□□□□ 0.69
USP39-218ENST00000493829 RPP40O75818 363 aaKnown RBP19.34■□□□□ 0.69
USP39-218ENST00000493829 TBC1D3HP0C7X1 549 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 ERVK-10P10266 1014 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 MAT2AP31153 395 aaKnown RBP19.34■□□□□ 0.69
USP39-218ENST00000493829 PPP2CBP62714 309 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 PPP2CAP67775 309 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 SFSWAPQ12872 951 aaKnown RBP19.34■□□□□ 0.69
USP39-218ENST00000493829 TBC1D3GQ6DHY5 549 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 TBC1D3CQ6IPX1 549 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 Q6ZVL8 140 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 TBC1D3Q8IZP1 549 aaPredicted RBP19.34■□□□□ 0.69
USP39-218ENST00000493829 OTUD6BQ8N6M0 293 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 FAM131CQ96AQ9 280 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 BTBD1Q9H0C5 482 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 PKD2L2Q9NZM6 624 aa19.34■□□□□ 0.69
USP39-218ENST00000493829 ZNF106Q9H2Y7 1883 aaKnown RBP19.34■□□□□ 0.69
USP39-218ENST00000493829 CCDC162PA2VCL2 907 aa19.33■□□□□ 0.69
USP39-218ENST00000493829 IGLON5A6NGN9 336 aa19.33■□□□□ 0.69
USP39-218ENST00000493829 RNGTTO60942 597 aaKnown RBP19.33■□□□□ 0.69
USP39-218ENST00000493829 PAPSS2O95340 614 aaPredicted RBP19.33■□□□□ 0.69
USP39-218ENST00000493829 GM2AP17900 193 aa19.33■□□□□ 0.69
USP39-218ENST00000493829 PAMP19021 973 aa19.33■□□□□ 0.69
USP39-218ENST00000493829 ARNTP27540 789 aa19.33■□□□□ 0.69
USP39-218ENST00000493829 SLC29A2Q14542 456 aa19.33■□□□□ 0.69
USP39-218ENST00000493829 LONRF1Q17RB8 773 aa19.33■□□□□ 0.69
USP39-218ENST00000493829 PTAR1Q7Z6K3 402 aaPredicted RBP19.33■□□□□ 0.69
USP39-218ENST00000493829 GPR26Q8NDV2 337 aa19.33■□□□□ 0.69
USP39-218ENST00000493829 HNRNPLLQ8WVV9 542 aaKnown RBP19.33■□□□□ 0.69
USP39-218ENST00000493829 MRRFQ96E11 262 aaKnown RBP19.33■□□□□ 0.69
USP39-218ENST00000493829 CERS2Q96G23 380 aa19.33■□□□□ 0.69
USP39-218ENST00000493829 FAM169AQ9Y6X4 670 aa19.33■□□□□ 0.69
USP39-218ENST00000493829 NUMA1Q14980 2115 aa19.33■□□□□ 0.69
USP39-218ENST00000493829 A0A1W2PQU0 124 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 H0Y858 1186 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 GOT2P00505 430 aaKnown RBP19.33■□□□□ 0.68
USP39-218ENST00000493829 PRSS56P0CW18 603 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 C7P10643 843 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 MC4RP32245 332 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 PHBP35232 272 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 SPAM1P38567 509 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 SPINT3P49223 89 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 KIAA0930Q6ICG6 404 aaPredicted RBP19.33■□□□□ 0.68
USP39-218ENST00000493829 KCNMB4Q86W47 210 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 CAMKK1Q8N5S9 505 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 PNPLA1Q8N8W4 532 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 SCAMP4Q969E2 229 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 TOE1Q96GM8 510 aaKnown RBP19.33■□□□□ 0.68
USP39-218ENST00000493829 CDKN2AIPNLQ96HQ2 116 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 FAM96AQ9H5X1 160 aa19.33■□□□□ 0.68
USP39-218ENST00000493829 ZFR2Q9UPR6 939 aaKnown RBP19.33■□□□□ 0.68
USP39-218ENST00000493829 LAMTOR5O43504 91 aa19.32■□□□□ 0.68
USP39-218ENST00000493829 RECQL5O94762 991 aaPredicted RBP19.32■□□□□ 0.68
USP39-218ENST00000493829 SEMA4FO95754 770 aa19.32■□□□□ 0.68
USP39-218ENST00000493829 SHBGP04278 402 aa19.32■□□□□ 0.68
USP39-218ENST00000493829 STX2P32856 288 aa19.32■□□□□ 0.68
USP39-218ENST00000493829 HADHAP40939 763 aa19.32■□□□□ 0.68
USP39-218ENST00000493829 ACVR1Q04771 509 aa19.32■□□□□ 0.68
USP39-218ENST00000493829 HSP90AA5PQ58FG0 334 aa19.32■□□□□ 0.68
USP39-218ENST00000493829 MREGQ8N565 214 aa19.32■□□□□ 0.68
USP39-218ENST00000493829 OR2W6PQ8NHA6 318 aa19.32■□□□□ 0.68
USP39-218ENST00000493829 NUS1Q96E22 293 aa19.32■□□□□ 0.68
USP39-218ENST00000493829 COQ10AQ96MF6 247 aa19.32■□□□□ 0.68
USP39-218ENST00000493829 PREBQ9HCU5 417 aa19.32■□□□□ 0.68
USP39-218ENST00000493829 IARS2Q9NSE4 1012 aaKnown RBP19.32■□□□□ 0.68
USP39-218ENST00000493829 PLXNA2O75051 1894 aa19.31■□□□□ 0.68
USP39-218ENST00000493829 A0A087WUV0 522 aaPredicted RBP19.31■□□□□ 0.68
USP39-218ENST00000493829 IGHV1OR15-9A0A0B4J2B8 117 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms