RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 TRMT11Q7Z4G4 463 aaKnown RBP12.65□□□□□ -0.38
VPS52-220ENST00000493674 RAVER1Q8IY67 606 aaKnown RBP12.65□□□□□ -0.38
VPS52-220ENST00000493674 GOLGA6L1Q8N7Z2 621 aa12.65□□□□□ -0.38
VPS52-220ENST00000493674 CALML6Q8TD86 181 aa12.65□□□□□ -0.38
VPS52-220ENST00000493674 FAM3CQ92520 227 aa12.65□□□□□ -0.38
VPS52-220ENST00000493674 ISL2Q96A47 359 aa12.65□□□□□ -0.38
VPS52-220ENST00000493674 HDAC8Q9BY41 377 aa12.65□□□□□ -0.38
VPS52-220ENST00000493674 GPR63Q9BZJ6 419 aa12.65□□□□□ -0.38
VPS52-220ENST00000493674 CD320Q9NPF0 282 aa12.65□□□□□ -0.38
VPS52-220ENST00000493674 PCDH12Q9NPG4 1184 aa12.65□□□□□ -0.38
VPS52-220ENST00000493674 IARS2Q9NSE4 1012 aaKnown RBP12.65□□□□□ -0.38
VPS52-220ENST00000493674 MARCH4Q9P2E8 410 aaPredicted RBP12.65□□□□□ -0.38
VPS52-220ENST00000493674 SORCS3Q9UPU3 1222 aa12.65□□□□□ -0.38
VPS52-220ENST00000493674 ACTL7BQ9Y614 415 aa12.65□□□□□ -0.38
VPS52-220ENST00000493674 IQANK1A0A1B0GTG1 560 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 C1QTNF3-AMACRE9PGA6 284 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 GOLGA8TH3BQL2 631 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 KPNA3O00505 521 aaPredicted RBP12.64□□□□□ -0.39
VPS52-220ENST00000493674 MAN2B1O00754 1011 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 STX7O15400 261 aaKnown RBP12.64□□□□□ -0.39
VPS52-220ENST00000493674 CLDN7O95471 211 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 GOT2P00505 430 aaKnown RBP12.64□□□□□ -0.39
VPS52-220ENST00000493674 C1SP09871 688 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 ATP5DP30049 168 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 MAGEA12P43365 314 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 LIMK2P53671 638 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 SEC13P55735 322 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 PRAMEP78395 509 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 DNAJC3Q13217 504 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 GRTP1Q5TC63 336 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 ZNF470Q6ECI4 717 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 KIAA1211LQ6NV74 962 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 TIFABQ6ZNK6 161 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 SH2D5Q6ZV89 423 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 EXOC3L1Q86VI1 746 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 CILP2Q8IUL8 1156 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 DENND6AQ8IWF6 608 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 KRT222Q8N1A0 295 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 OR2T3Q8NH03 318 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 OR4L1Q8NH43 312 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 DTX3LQ8TDB6 740 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 MTBPQ96DY7 904 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 PPP1R16AQ96I34 528 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 RHOJQ9H4E5 214 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 SUDS3Q9H7L9 328 aaPredicted RBP12.64□□□□□ -0.39
VPS52-220ENST00000493674 PPANQ9NQ55 473 aaKnown RBP12.64□□□□□ -0.39
VPS52-220ENST00000493674 OGFRQ9NZT2 677 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 SENP1Q9P0U3 644 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 TBK1Q9UHD2 729 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 FKBPLQ9UIM3 349 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 FBXO5Q9UKT4 447 aa12.64□□□□□ -0.39
VPS52-220ENST00000493674 NOVA2Q9UNW9 492 aaKnown RBP12.64□□□□□ -0.39
VPS52-220ENST00000493674 TRBV5-4A0A0C4DH59 114 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 OR51F1A6NGY5 319 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 AGAP14A8MT82 685 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 H0Y858 1186 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 PSMD11O00231 422 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 CD3EAPO15446 510 aaKnown RBP12.63□□□□□ -0.39
VPS52-220ENST00000493674 KRT37O76014 449 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 KRT38O76015 456 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 KLF8O95600 359 aaPredicted RBP12.63□□□□□ -0.39
VPS52-220ENST00000493674 ADH1BP00325 375 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 ITGA2BP08514 1039 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 SNRPAP09012 282 aaKnown RBP12.63□□□□□ -0.39
VPS52-220ENST00000493674 ADRB3P13945 408 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 BPIP17213 487 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 GM2AP17900 193 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 COL9A1P20849 921 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 NFKBIAP25963 317 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 DRD3P35462 400 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 CCNFP41002 786 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 WASP42768 502 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 LEPRP48357 1165 aaKnown RBP12.63□□□□□ -0.39
VPS52-220ENST00000493674 PSMD8P48556 350 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 DCDC1P59894 354 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 MAGOHP61326 146 aaKnown RBP12.63□□□□□ -0.39
VPS52-220ENST00000493674 RPS14P62263 151 aaKnown RBP12.63□□□□□ -0.39
VPS52-220ENST00000493674 MPP1Q00013 466 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 SATB1Q01826 763 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 CREB5Q02930 508 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 PTSQ03393 145 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 THOC5Q13769 683 aaKnown RBP12.63□□□□□ -0.39
VPS52-220ENST00000493674 SEMA3AQ14563 771 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 SMAD1Q15797 465 aaKnown RBP12.63□□□□□ -0.39
VPS52-220ENST00000493674 CST6Q15828 149 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 LRRC73Q5JTD7 316 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 PIP5KL1Q5T9C9 394 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 FAM46CQ5VWP2 391 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 KCTD16Q68DU8 428 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 ERN2Q76MJ5 926 aaKnown RBP12.63□□□□□ -0.39
VPS52-220ENST00000493674 TAOK1Q7L7X3 1001 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 STRA8Q7Z7C7 330 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 ZC3HC1Q86WB0 502 aaKnown RBP12.63□□□□□ -0.39
VPS52-220ENST00000493674 MMAAQ8IVH4 418 aaKnown RBP12.63□□□□□ -0.39
VPS52-220ENST00000493674 UBALD2Q8IYN6 164 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 AADATQ8N5Z0 425 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 TXNDC5Q8NBS9 432 aaKnown RBP12.63□□□□□ -0.39
VPS52-220ENST00000493674 RAB7BQ96AH8 199 aa12.63□□□□□ -0.39
VPS52-220ENST00000493674 MRRFQ96E11 262 aaKnown RBP12.63□□□□□ -0.39
VPS52-220ENST00000493674 PLEKHG4BQ96PX9 1271 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms