RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 AAK1Q2M2I8 961 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 ZNF260Q3ZCT1 412 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 ODF2Q5BJF6 829 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 CDC73Q6P1J9 531 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 CCBE1Q6UXH8 406 aaPredicted RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 PTCHD4Q6ZW05 846 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 RABEPKQ7Z6M1 372 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 ZDHHC17Q8IUH5 632 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 FAM185AQ8N0U4 392 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 FSTL5Q8N475 847 aaPredicted RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 NRACQ8N912 160 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 CADM4Q8NFZ8 388 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 MBD3L2Q8NHZ7 208 aaPredicted RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 SPATA20Q8TB22 786 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 ABHD5Q8WTS1 349 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 CORO2AQ92828 525 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 ZNF653Q96CK0 615 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 KLHL29Q96CT2 875 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 TRIM44Q96DX7 344 aaPredicted RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 ELMOD3Q96FG2 381 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 TRMT61AQ96FX7 289 aaKnown RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 PRR11Q96HE9 360 aaPredicted RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 C1orf74Q96LT6 269 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 NEK1Q96PY6 1258 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 HIST1H2AAQ96QV6 131 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 GAD1Q99259 594 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 TUBB2BQ9BVA1 445 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 SCNM1Q9BWG6 230 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 VN1R3Q9BXE9 311 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 CACNG6Q9BXT2 260 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 TEX12Q9BXU0 123 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 FAM83DQ9H4H8 585 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 SLC35C2Q9NQQ7 365 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 GIMAP4Q9NUV9 329 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 EHD2Q9NZN4 543 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 ANAPC2Q9UJX6 822 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 KLHL20Q9Y2M5 609 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 TRIM17Q9Y577 477 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 FGD6Q6ZV73 1430 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 SUPT6HQ7KZ85 1726 aaKnown RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 ATP10AO60312 1499 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 TCOF1Q13428 1488 aaKnown RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 ABCA6Q8N139 1617 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 ITSN2Q9NZM3 1697 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 DIP2CQ9Y2E4 1556 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 MIA2Q96PC5 1412 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 TEX13CA0A0J9YWL9 993 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 ZSCAN5CA6NGD5 496 aaPredicted RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 BTBD19C9JJ37 291 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PAGE4O60829 102 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 TACC1O75410 805 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 SEC14L2O76054 403 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PENKP01210 267 aaPredicted RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 KLKB1P03952 638 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 RB1P06400 928 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 FDPSP14324 419 aaKnown RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 CREB1P16220 341 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 FERP16591 822 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 TRIM21P19474 475 aaKnown RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 EPHA3P29320 983 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 HNF1BP35680 557 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 SUOXP51687 545 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PGDP52209 483 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 MVDP53602 400 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 TUBB4BP68371 445 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 EFNB1P98172 346 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 THOC5Q13769 683 aaKnown RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 RCN2Q14257 317 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 NTRK2Q16620 822 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 HYAL4Q2M3T9 481 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 SMU1Q2TAY7 513 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 NAA35Q5VZE5 725 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 FAM90A2PQ658T7 463 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 IRGCQ6NXR0 463 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 SHC4Q6S5L8 630 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PET117Q6UWS5 81 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PPP1R42Q7Z4L9 355 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 ARHGAP12Q8IWW6 846 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PEX5LQ8IYB4 626 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 POMGNT2Q8NAT1 580 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 OSR1Q8TAX0 266 aaPredicted RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 ZNF398Q8TD17 642 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 HSPH1Q92598 858 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 SAT2Q96F10 170 aaPredicted RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 HMCESQ96FZ2 354 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 REXO5Q96IC2 774 aaKnown RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 CNDP1Q96KN2 507 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PAAF1Q9BRP4 392 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 NUDT22Q9BRQ3 303 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 TMEM79Q9BSE2 394 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 ANP32EQ9BTT0 268 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 HDHD5Q9BXW7 423 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 KRT23Q9C075 422 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 EPHX3Q9H6B9 360 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 USP29Q9HBJ7 922 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 SETD4Q9NVD3 440 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 COMMD8Q9NX08 183 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 CNIH4Q9P003 139 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PEMTQ9UBM1 199 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 MGAT4CQ9UBM8 478 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms