RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.48□□□□□ -0.57
C9orf3-220ENST00000489318 MARCH4Q9P2E8 410 aaPredicted RBP11.48□□□□□ -0.57
C9orf3-220ENST00000489318 B4GALT6Q9UBX8 382 aa11.48□□□□□ -0.57
C9orf3-220ENST00000489318 FKBPLQ9UIM3 349 aa11.48□□□□□ -0.57
C9orf3-220ENST00000489318 SARDHQ9UL12 918 aa11.48□□□□□ -0.57
C9orf3-220ENST00000489318 CORO1CQ9ULV4 474 aaPredicted RBP11.48□□□□□ -0.57
C9orf3-220ENST00000489318 SMG5Q9UPR3 1016 aaKnown RBP11.48□□□□□ -0.57
C9orf3-220ENST00000489318 PKP3Q9Y446 797 aa11.48□□□□□ -0.57
C9orf3-220ENST00000489318 TRBV5-4A0A0C4DH59 114 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 TMEM120BA0PK00 339 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 OR51F1A6NGY5 319 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 C16orf96A6NNT2 1141 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 AGAP14A8MT82 685 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 C1QTNF3-AMACRE9PGA6 284 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 H0Y858 1186 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 PSMD11O00231 422 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 CD3EAPO15446 510 aaKnown RBP11.47□□□□□ -0.57
C9orf3-220ENST00000489318 SPINT1O43278 529 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 CLDN7O95471 211 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 AHSGP02765 367 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 EPHX1P07099 455 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 ASGR2P07307 311 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 C1SP09871 688 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 IL9P15248 144 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 TIMP2P16035 220 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 VIPR1P32241 457 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 MC4RP32245 332 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 CD151P48509 253 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 SERPINB8P50452 374 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 CLCN5P51795 746 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 DCDC1P59894 354 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 CTBP1Q13363 440 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 TDGQ13569 410 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 SEMA3AQ14563 771 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 ZKSCAN8Q15776 578 aaPredicted RBP11.47□□□□□ -0.57
C9orf3-220ENST00000489318 SMAD1Q15797 465 aaKnown RBP11.47□□□□□ -0.57
C9orf3-220ENST00000489318 ZDHHC20Q5W0Z9 365 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 MRNIPQ6NTE8 343 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 PTAR1Q7Z6K3 402 aaPredicted RBP11.47□□□□□ -0.57
C9orf3-220ENST00000489318 TSPAN33Q86UF1 283 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 OR6P1Q8NGX9 317 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 FAM131CQ96AQ9 280 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 ARRDC3Q96B67 414 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 PLEKHG4BQ96PX9 1271 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 TCF12Q99081 682 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 SUDS3Q9H7L9 328 aaPredicted RBP11.47□□□□□ -0.57
C9orf3-220ENST00000489318 CD248Q9HCU0 757 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 INTS10Q9NVR2 710 aaKnown RBP11.47□□□□□ -0.57
C9orf3-220ENST00000489318 APPL1Q9UKG1 709 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 DUSP12Q9UNI6 340 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 SPTBN5Q9NRC6 3674 aaKnown RBP11.47□□□□□ -0.57
C9orf3-220ENST00000489318 BPTFQ12830 3046 aa11.47□□□□□ -0.57
C9orf3-220ENST00000489318 XIRP2A4UGR9 3374 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 FAM47DPA6NHR8 397 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 TPP1O14773 563 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 AREL1O15033 823 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 POLR3GO15318 223 aaPredicted RBP11.46□□□□□ -0.57
C9orf3-220ENST00000489318 NARSO43776 548 aaKnown RBP11.46□□□□□ -0.57
C9orf3-220ENST00000489318 S1PR4O95977 384 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 EGFP01133 1207 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 SLC4A1P02730 911 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 MT-ND3P03897 115 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 BPIP17213 487 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 KRT4P19013 534 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 NTSR1P30989 418 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 SPAM1P38567 509 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 NEK3P51956 506 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 ADARP55265 1226 aaKnown RBP11.46□□□□□ -0.57
C9orf3-220ENST00000489318 MRPS21P82921 87 aaKnown RBP11.46□□□□□ -0.57
C9orf3-220ENST00000489318 TMPRSS15P98073 1019 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 PTSQ03393 145 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 CACNG1Q06432 222 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 CCINQ13939 588 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 PON2Q15165 354 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 HSF5Q4G112 596 aaPredicted RBP11.46□□□□□ -0.57
C9orf3-220ENST00000489318 FBXO43Q4G163 708 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 AARS2Q5JTZ9 985 aaKnown RBP11.46□□□□□ -0.57
C9orf3-220ENST00000489318 IER5LQ5T953 404 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 RNF187Q5TA31 235 aaPredicted RBP11.46□□□□□ -0.57
C9orf3-220ENST00000489318 MROH9Q5TGP6 573 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 MICALCLQ6ZW33 695 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 TRMT11Q7Z4G4 463 aaKnown RBP11.46□□□□□ -0.57
C9orf3-220ENST00000489318 CHPFQ8IZ52 775 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 C4orf33Q8N1A6 199 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 DCLK2Q8N568 766 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 PAF1Q8N7H5 531 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 IL17RCQ8NAC3 791 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 PPM1EQ8WY54 764 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 CABS1Q96KC9 395 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 HDAC8Q9BY41 377 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 CDH19Q9H159 772 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 PCDH12Q9NPG4 1184 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 ADAM21Q9UKJ8 722 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 VPS9D1Q9Y2B5 631 aa11.46□□□□□ -0.57
C9orf3-220ENST00000489318 MTO1Q9Y2Z2 717 aaKnown RBP11.46□□□□□ -0.57
C9orf3-220ENST00000489318 GLYATL1P3A0A0U1RQE8 302 aa11.45□□□□□ -0.58
C9orf3-220ENST00000489318 A0A0U1RQS6 177 aa11.45□□□□□ -0.58
C9orf3-220ENST00000489318 FAM95CA0A1B0GW59 222 aa11.45□□□□□ -0.58
C9orf3-220ENST00000489318 RGSL1A5PLK6 1076 aa11.45□□□□□ -0.58
C9orf3-220ENST00000489318 KPNA3O00505 521 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms