RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	RALGPS1	Q5JS13	557 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	HECTD3	Q5T447	861 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	TEDDM1	Q5T9Z0	273 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	FOXB2	Q5VYV0	432 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	PDPK2P	Q6A1A2	396 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	KIAA0930	Q6ICG6	404 aa	Predicted RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	PKN3	Q6P5Z2	889 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	SLC23A3	Q6PIS1	610 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	LVRN	Q6Q4G3	990 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	KYAT3	Q6YP21	454 aa	Known RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	ZNF783	Q6ZMS7	281 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	KIAA0408	Q6ZU52	694 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	SPATA21	Q7Z572	469 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	DEFB128	Q7Z7B8	93 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	CLEC14A	Q86T13	490 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	NETO2	Q8NC67	525 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	STKLD1	Q8NE28	680 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	OR52K1	Q8NGK4	314 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	OR6Y1	Q8NGX8	325 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	ARRDC2	Q8TBH0	407 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	TCP10L	Q8TDR4	215 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	DIS3L	Q8TF46	1054 aa	Known RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	DEPDC1B	Q8WUY9	529 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	DYDC1	Q8WWB3	177 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	ZNF75CP	Q92670	426 aa	Predicted RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	IGSF8	Q969P0	613 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	PSMG2	Q969U7	264 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	TRIM43	Q96BQ3	446 aa	Predicted RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	ZNF669	Q96BR6	464 aa	Predicted RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	HMCES	Q96FZ2	354 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	TMEM169	Q96HH4	297 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	CELF6	Q96J87	481 aa	Known RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	CABS1	Q96KC9	395 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	FCRL3	Q96P31	734 aa	Predicted RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	AGAP3	Q96P47	875 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	RBBP8	Q99708	897 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	SEPT5	Q99719	369 aa	Predicted RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	TBL1Y	Q9BQ87	522 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	HDAC8	Q9BY41	377 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	ZBP1	Q9H171	429 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	MAGEH1	Q9H213	219 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	TRIT1	Q9H3H1	467 aa	Known RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	ACTR5	Q9H9F9	607 aa	Predicted RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	IL23A	Q9NPF7	189 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	TREX1	Q9NSU2	369 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	HAUS2	Q9NVX0	235 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	RBM22	Q9NW64	420 aa	Known RBP eCLIP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	GPATCH2	Q9NW75	528 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	SPG21	Q9NZD8	308 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	LMCD1	Q9NZU5	365 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	SAMD15	Q9P1V8	674 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	GRID1	Q9ULK0	1009 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	SSX2IP	Q9Y2D8	614 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	TBC1D30	Q9Y2I9	924 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	ARL2BP	Q9Y2Y0	163 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	IRAK3	Q9Y616	596 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	RPS6KL1	Q9Y6S9	549 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	VWA8	A3KMH1	1905 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247		A0A1B0GVM2	712 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	ILVBL	A1L0T0	632 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	TCAF2	A6NFQ2	919 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247		F5H5T6	163 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	DFFA	O00273	331 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	COPE	O14579	308 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	COCH	O43405	550 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	TIMM44	O43615	452 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	UGT1A9	O60656	530 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	GLRA3	O75311	464 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	SNN	O75324	88 aa	Predicted RBP	5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	SPAG7	O75391	227 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	STC2	O76061	302 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	KIAA0754	O94854	1291 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	PRAMEF1	O95521	474 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	MOCS2	O96007	188 aa	Predicted RBP	5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	GSR	P00390	522 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	ALDOA	P04075	364 aa	Known RBP	5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	UROD	P06132	367 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	ATP5B	P06576	529 aa	Known RBP	5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	MMP2	P08253	660 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	ITGA2B	P08514	1039 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	VIM	P08670	466 aa	Known RBP	5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	POU2F2	P09086	479 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	CTSA	P10619	480 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	CR2	P20023	1033 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	ADRA1D	P25100	572 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	HSD3B2	P26439	372 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	SPR	P35270	261 aa	Predicted RBP	5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	SKIV2L2	P42285	1042 aa	Known RBP	5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	ARCN1	P48444	511 aa	Known RBP	5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	SLC11A2	P49281	568 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	ARPP19	P56211	112 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	WNT3A	P56704	352 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	DEFB103A	P81534	67 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	ACVR1	Q04771	509 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	EGR3	Q06889	387 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	MTM1	Q13496	603 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	SKIDA1	Q1XH10	827 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	RABGAP1L	Q5R372	815 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	SYCP2L	Q5T4T6	812 aa		5.59	□□□□□ -1.51
ATG4A-208	ENST00000489247	MARC1	Q5VT66	337 aa		5.59	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 70 ms